Basic Information:

  VIRBase ID:  

VHID00446493

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-8-3p:  MIMAT0002186          ZNF213:  NR_104432     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-8-3p	ZNF213
miRBase Accession/Entrez ID	MIMAT0002186	7760
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CR53//ZKSCAN21//ZSCAN53

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZNF213	chr16:3185957(+) A-I      intronic chr16:3186565(+) A-I      intronic chr16:3186094(+) A-I      intronic chr16:3185893(+) A-I      intronic chr16:3185940(+) A-I      intronic chr16:3185895(+) A-I      intronic chr16:3186477(+) A-I      intronic chr16:3186541(+) A-I      intronic chr16:3186621(+) A-I      intronic chr16:3186114(+) A-I      intronic chr16:3186540(+) A-I      intronic chr16:3185943(+) A-I      intronic chr16:3186112(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ZNF213	chr16:3192536(+) C-T intron -    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZNF213	chr16:3187217-3187218(+) m6A 5'UTR//exon       25456834//24981863 chr16:3187306-3187307(+) m6A CDS//exon       24284625//25456834//24981863 chr16:3187367-3187368(+) m6A CDS//exon       24284625//25456834 chr16:3187993-3187994(+) m6A exon//intron       24284625 chr16:3189036-3189037(+) m6A 3'UTR//CDS//exon//intron       24284625 chr16:3189063-3189064(+) m6A 3'UTR//CDS//exon//intron       24284625 chr16:3189078-3189079(+) m6A 3'UTR//CDS//exon//intron       24284625 chr16:3189087-3189088(+) m6A 3'UTR//CDS//exon//intron       24284625 chr16:3189151-3189152(+) m6A exon//intron       24284625 chr16:3189387-3189388(+) m6A exon//intron       24284625 chr16:3190649-3190650(+) m6A exon//intron       - chr16:3190659-3190660(+) m6A exon//intron       25456834 chr16:3190757-3190758(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085 chr16:3190818-3190819(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085 chr16:3190896-3190897(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3190959-3190960(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960//22608085 chr16:3191043-3191044(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22575960//22608085 chr16:3191220-3191221(+) m6A 3'UTR//CDS//exon       24284625 chr16:3191367-3191368(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr16:3191416-3191417(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr16:3191458-3191459(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr16:3191509-3191510(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr16:3191639-3191640(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3191656-3191657(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3191791-3191792(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr16:3191821-3191822(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr16:3191833-3191834(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr16:3191851-3191852(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr16:3191945-3191946(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr16:3192061-3192062(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr16:3192068-3192069(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr16:3192117-3192118(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr16:3192720-3192721(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr16:3192726-3192727(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr16:3192748-3192749(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr16:3192760-3192761(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr16:3192800-3192801(+) m6A 3'UTR//exon       24284625//25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	kshv-miR-K12-8-3p	Exosome Jurkat-derived T cell line (J77cl20)     21505438
	ZNF213	Chromatin K562 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-8-3p
Interactor2: ZNF213

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg