Detail Information

Basic Information:


  VIRBase ID:  

VHID00446016

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-3p:           IQGAP3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-9-3p IQGAP3
miRBase
Accession/Entrez ID		 MIMAT0002185 128239
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IQGAP3
chr1:156519141(-) A-I      intronic
chr1:156519151(-) A-I      intronic
chr1:156519180(-) A-I      intronic
chr1:156519187(-) A-I      intronic
chr1:156524646(-) A-I      intronic
chr1:156523520(-) A-I      intronic
chr1:156523512(-) A-I      intronic
chr1:156525182(-) A-I      intronic
chr1:156523511(-) A-I      intronic
chr1:156522750(-) A-I      intronic
chr1:156519200(-) A-I      intronic
chr1:156522744(-) A-I      intronic
chr1:156522736(-) A-I      intronic
chr1:156522622(-) A-I      intronic
chr1:156519428(-) A-I      intronic
chr1:156519416(-) A-I      intronic
chr1:156519399(-) A-I      intronic
chr1:156524644(-) A-I      intronic
chr1:156525143(-) A-I      intronic
chr1:156525200(-) A-I      intronic
chr1:156525206(-) A-I      intronic
chr1:156523576(-) A-I      intronic
chr1:156497231(-) A-I      intronic
chr1:156525245(-) A-I      intronic
chr1:156523610(-) A-I      intronic
chr1:156512028(-) A-I      intronic
chr1:156496773(-) A-I      intronic
chr1:156502131(-) A-I      intronic
chr1:156524683(-) A-I      intronic
chr1:156502127(-) A-I      intronic
chr1:156501961(-) A-I      intronic
chr1:156540552(-) A-I      intronic
chr1:156497218(-) A-I      intronic
chr1:156524657(-) A-I      intronic
chr1:156497170(-) A-I      intronic
chr1:156497158(-) A-I      intronic
chr1:156512540(-) A-I      intronic
chr1:156502404(-) A-I      intronic
chr1:156523645(-) A-I      intronic
chr1:156524645(-) A-I      intronic
chr1:156522757(-) A-I      intronic
chr1:156496692(-) A-I      intronic
chr1:156522621(-) A-I      intronic
chr1:156523572(-) A-I      intronic
chr1:156522694(-) A-I      intronic
chr1:156540166(-) A-I      intronic
chr1:156524656(-) A-I      intronic
chr1:156522766(-) A-I      intronic
chr1:156523646(-) A-I      intronic
chr1:156523490(-) A-I      intronic
chr1:156522895(-) A-I      intronic
chr1:156512538(-) A-I      intronic
chr1:156525185(-) A-I      intronic
chr1:156502437(-) A-I      intronic
chr1:156524593(-) A-I      intronic
chr1:156525285(-) A-I      intronic
chr1:156525187(-) A-I      intronic
chr1:156540466(-) A-I      intronic
chr1:156523640(-) A-I      intronic
chr1:156525293(-) A-I      intronic
chr1:156523581(-) A-I      intronic
chr1:156540165(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED IQGAP3
chr1:156512540(-) A-G intron -    22484847
chr1:156523464(-) G-A intron -    22484847
chr1:156523490(-) A-G intron -    22484847
chr1:156523581(-) A-G intron -    22484847
chr1:156524645(-) A-G intron -    22484847
chr1:156524656(-) A-G intron -    22484847
chr1:156525285(-) A-G intron -    22484847
chr1:156525293(-) A-G intron -    22484847
chr1:156540165(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IQGAP3
chr1:156495758-156495759(-) m6A 3'UTR//intron       27773535
chr1:156496002-156496003(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:156496008-156496009(-) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:156496036-156496037(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:156496110-156496111(-) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085
chr1:156496176-156496177(-) m6A 3'UTR       24284625//24981863//27773535//22575960
chr1:156496192-156496193(-) m6A 3'UTR       24284625//24981863//27773535//27371828
chr1:156496349-156496350(-) m6A CDS       27773535
chr1:156499972-156499973(-) m6A CDS       24284625//27773536
chr1:156500057-156500058(-) m6A CDS       24284625//27773536//22575960
chr1:156502818-156502819(-) m6A CDS       27773535//27773536
chr1:156502867-156502868(-) m6A CDS       27773535//27773536
chr1:156503623-156503624(-) m6A CDS       24284625//27371828//27773536
chr1:156503647-156503648(-) m6A CDS       24284625//27371828//27773536
chr1:156503845-156503846(-) m6A CDS       27371828//27773536
chr1:156503864-156503865(-) m6A CDS       27773536
chr1:156508831-156508832(-) m6A exon//intron       27773535
chr1:156508853-156508854(-) m6A exon//intron       27773535
chr1:156508926-156508927(-) m6A exon//intron       27773535
chr1:156508945-156508946(-) m6A exon//intron       27773535
chr1:156509005-156509006(-) m6A exon//intron       27773535
chr1:156509014-156509015(-) m6A exon//intron       27773535
chr1:156509022-156509023(-) m6A exon//intron       27773535
chr1:156509050-156509051(-) m6A exon//intron       27773535
chr1:156509151-156509152(-) m6A exon//intron       27773535
chr1:156509187-156509188(-) m6A CDS//exon       27773535
chr1:156509277-156509278(-) m6A CDS       27773535
chr1:156509282-156509283(-) m6A CDS       27773535
chr1:156509665-156509666(-) m6A CDS       27773535
chr1:156509711-156509712(-) m6A CDS       27773535
chr1:156509737-156509738(-) m6A CDS       24981863//27773535
chr1:156510515-156510516(-) m6A CDS       27773535
chr1:156521603-156521604(-) m6A CDS       27773536
chr1:156521623-156521624(-) m6A CDS       27773536
chr1:156521771-156521772(-) m6A CDS       27773536
chr1:156521783-156521784(-) m6A CDS       27773536
chr1:156530732-156530733(-) m6A CDS       27773535//27371828//27773536
chr1:156531645-156531646(-) Gm CDS       -
chr1:156531648-156531649(-) m6A CDS       27773535//27773536
chr1:156531654-156531655(-) m6A CDS       27773535//27773536
chr1:156531684-156531685(-) m6A CDS       27773535//27773536
chr1:156532149-156532150(-) Tm intron       -
chr1:156533450-156533451(-) m6A CDS       27773535
chr1:156534442-156534443(-) m6A CDS       27773535
chr1:156534460-156534461(-) m6A CDS       27773535
chr1:156534467-156534468(-) m6A CDS       27773535
chr1:156535867-156535868(-) m6A CDS       27773535
chr1:156536213-156536214(-) m1A CDS       26863196
chr1:156542317-156542318(-) Gm 5'UTR//CDS       -
chr1:156542322-156542323(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr1:156542330-156542331(-) m1A 5'UTR       26863196//26863410
chr1:156542339-156542340(-) m6A 5'UTR       24284625//25456834//24981863//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate IQGAP3
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-9-3p
Interactor2: IQGAP3

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence miRanda//PARalyzer//PITA//RNAHybrid//Targetscan
Support Database ViRBase//VIRmiRNA//VmiReg

References:


PMID 22100165 Target region 3'UTR
Source ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line BC-1 cells Interactor2 expression None
Description Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.

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