Basic Information:

  VIRBase ID:  

VHID00446005

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-3p:  MIMAT0002185          SWSAP1:  NM_175871     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-9-3p	SWSAP1
miRBase Accession/Entrez ID	MIMAT0002185	126074
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C19orf39//SWS1AP1//ZSWIM7AP1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SWSAP1	chr19:11485572-11485573(+) m6A CDS       24284625 chr19:11485588-11485589(+) m6A CDS       24284625 chr19:11486315-11486316(+) m6A CDS       24284625//24981863 chr19:11486360-11486361(+) m6A CDS       24284625//25456834//24981863//22608085 chr19:11486428-11486429(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr19:11486578-11486579(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr19:11486744-11486745(+) Y 3'UTR       26075521 chr19:11486755-11486756(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:11486773-11486774(+) m6A 3'UTR       25456834//24981863 chr19:11486779-11486780(+) m6A 3'UTR       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SWSAP1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-9-3p
Interactor2: SWSAP1

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.