Basic Information:

  VIRBase ID:  

VHID00445891

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-3p:  MIMAT0002185          BRIP1:  NM_032043     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-9-3p	BRIP1
miRBase Accession/Entrez ID	MIMAT0002185	83990
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BACH1//FANCJ//OF

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BRIP1	chr17:59866272(-) A-I      intronic chr17:59866204(-) A-I      intronic chr17:59766608(-) A-I      intronic chr17:59766569(-) A-I      intronic chr17:59765747(-) A-I      intronic chr17:59765742(-) A-I      intronic chr17:59868263(-) A-I      intronic chr17:59868244(-) A-I      intronic chr17:59905653(-) A-I      intronic chr17:59868215(-) A-I      intronic chr17:59868787(-) A-I      intronic chr17:59868207(-) A-I      intronic chr17:59832820(-) A-I      intronic chr17:59832686(-) A-I      intronic chr17:59831107(-) A-I      intronic chr17:59831091(-) A-I      intronic chr17:59831086(-) A-I      intronic chr17:59831041(-) A-I      intronic chr17:59805372(-) A-I      intronic chr17:59797486(-) A-I      intronic chr17:59797029(-) A-I      intronic chr17:59797023(-) A-I      intronic chr17:59796999(-) A-I      intronic chr17:59796974(-) A-I      intronic chr17:59791437(-) A-I      intronic chr17:59791110(-) A-I      intronic chr17:59790218(-) A-I      intronic chr17:59790213(-) A-I      intronic chr17:59790023(-) A-I      intronic chr17:59790022(-) A-I      intronic chr17:59790010(-) A-I      intronic chr17:59790008(-) A-I      intronic chr17:59789992(-) A-I      intronic chr17:59789778(-) A-I      intronic chr17:59789752(-) A-I      intronic chr17:59789739(-) A-I      intronic chr17:59789731(-) A-I      intronic chr17:59789642(-) A-I      intronic chr17:59769088(-) A-I      intronic chr17:59768928(-) A-I      intronic chr17:59766623(-) A-I      intronic chr17:59766583(-) A-I      intronic chr17:59766553(-) A-I      intronic chr17:59766543(-) A-I      intronic chr17:59766528(-) A-I      intronic chr17:59765828(-) A-I      intronic chr17:59927645(-) A-I      intronic chr17:59927945(-) A-I      intronic chr17:59832837(-) A-I      intronic chr17:59928107(-) A-I      intronic chr17:59928132(-) A-I      intronic chr17:59935003(-) A-I      intronic chr17:59935041(-) A-I      intronic chr17:59923999(-) A-I      intronic chr17:59832838(-) A-I      intronic chr17:59832876(-) A-I      intronic chr17:59832884(-) A-I      intronic chr17:59836125(-) A-I      intronic chr17:59861411(-) A-I      intronic chr17:59866137(-) A-I      intronic chr17:59866169(-) A-I      intronic chr17:59866289(-) A-I      intronic chr17:59867795(-) A-I      intronic chr17:59867798(-) A-I      intronic chr17:59868097(-) A-I      intronic chr17:59868206(-) A-I      intronic chr17:59868259(-) A-I      intronic chr17:59921728(-) A-I      intronic chr17:59869563(-) A-I      intronic chr17:59879665(-) A-I      intronic chr17:59880843(-) A-I      intronic chr17:59880853(-) A-I      intronic chr17:59884227(-) A-I      intronic chr17:59884237(-) A-I      intronic chr17:59888761(-) A-I      intronic chr17:59888763(-) A-I      intronic chr17:59898228(-) A-I      intronic chr17:59898305(-) A-I      intronic chr17:59899011(-) A-I      intronic chr17:59919279(-) A-I      intronic chr17:59919282(-) A-I      intronic chr17:59921517(-) A-I      intronic chr17:59921743(-) A-I      intronic chr17:59921827(-) A-I      intronic chr17:59921868(-) A-I      intronic chr17:59921899(-) A-I      intronic chr17:59923379(-) A-I      intronic chr17:59923774(-) A-I      intronic chr17:59923930(-) A-I      intronic chr17:59927524(-) A-I      intronic chr17:59927531(-) A-I      intronic chr17:59927560(-) A-I      intronic chr17:59927601(-) A-I      intronic chr17:59927624(-) A-I      intronic chr17:59927636(-) A-I      intronic chr17:59760345(-) A-I      3'UTR chr17:59760349(-) A-I      3'UTR chr17:59760330(-) A-I      3'UTR chr17:59757669(-) A-I      3'UTR chr17:59888857(-) A-I      intronic chr17:59866057(-) A-I      intronic chr17:59928126(-) A-I      intronic chr17:59921509(-) A-I      intronic chr17:59790182(-) A-I      intronic chr17:59898989(-) A-I      intronic chr17:59789870(-) A-I      intronic chr17:59888766(-) A-I      intronic chr17:59836273(-) A-I      intronic chr17:59866576(-) A-I      intronic chr17:59888659(-) A-I      intronic chr17:59805090(-) A-I      intronic chr17:59868139(-) A-I      intronic chr17:59921917(-) A-I      intronic chr17:59792504(-) A-I      intronic chr17:59768990(-) A-I      intronic chr17:59867906(-) A-I      intronic chr17:59868072(-) A-I      intronic chr17:59797357(-) A-I      intronic chr17:59879815(-) A-I      intronic chr17:59797358(-) A-I      intronic chr17:59923886(-) A-I      intronic chr17:59923925(-) A-I      intronic chr17:59921795(-) A-I      intronic chr17:59853418(-) A-I      intronic chr17:59921468(-) A-I      intronic chr17:59929998(-) A-I      intronic chr17:59921369(-) A-I      intronic chr17:59791451(-) A-I      intronic chr17:59797359(-) A-I      intronic chr17:59898187(-) A-I      intronic chr17:59928137(-) A-I      intronic chr17:59889056(-) A-I      intronic chr17:59767353(-) A-I      intronic chr17:59868750(-) A-I      intronic chr17:59836309(-) A-I      intronic chr17:59923924(-) A-I      intronic chr17:59768981(-) A-I      intronic chr17:59921469(-) A-I      intronic chr17:59866404(-) A-I      intronic chr17:59869462(-) A-I      intronic chr17:59879603(-) A-I      intronic chr17:59934900(-) A-I      intronic chr17:59790183(-) A-I      intronic chr17:59797263(-) A-I      intronic chr17:59868238(-) A-I      intronic chr17:59866145(-) A-I      intronic chr17:59869549(-) A-I      intronic chr17:59810190(-) A-I      intronic chr17:59888759(-) A-I      intronic chr17:59791499(-) A-I      intronic chr17:59888723(-) A-I      intronic chr17:59884260(-) A-I      intronic chr17:59921508(-) A-I      intronic chr17:59869590(-) A-I      intronic chr17:59767251(-) A-I      intronic chr17:59789769(-) A-I      intronic chr17:59767175(-) A-I      intronic chr17:59780541(-) A-I      intronic chr17:59790141(-) A-I      intronic chr17:59866565(-) A-I      intronic chr17:59921493(-) A-I      intronic chr17:59792326(-) A-I      intronic chr17:59898199(-) A-I      intronic chr17:59868170(-) A-I      intronic chr17:59792291(-) A-I      intronic chr17:59831228(-) A-I      intronic chr17:59789743(-) A-I      intronic chr17:59923915(-) A-I      intronic chr17:59868129(-) A-I      intronic chr17:59888700(-) A-I      intronic chr17:59868767(-) A-I      intronic chr17:59809355(-) A-I      intronic chr17:59767285(-) A-I      intronic chr17:59868079(-) A-I      intronic chr17:59910945(-) A-I      intronic chr17:59867649(-) A-I      intronic chr17:59866516(-) A-I      intronic chr17:59868148(-) A-I      intronic chr17:59928089(-) A-I      intronic chr17:59899225(-) A-I      intronic chr17:59888722(-) A-I      intronic chr17:59910774(-) A-I      intronic chr17:59868254(-) A-I      intronic chr17:59789745(-) A-I      intronic chr17:59789643(-) A-I      intronic chr17:59799074(-) A-I      intronic chr17:59774224(-) A-I      intronic chr17:59831233(-) A-I      intronic chr17:59764549(-) A-I      intronic chr17:59858013(-) A-I      intronic chr17:59923964(-) A-I      intronic chr17:59898987(-) A-I      intronic chr17:59921488(-) A-I      intronic chr17:59810181(-) A-I      intronic chr17:59797470(-) A-I      intronic chr17:59928040(-) A-I      intronic chr17:59910772(-) A-I      intronic chr17:59868751(-) A-I      intronic chr17:59881951(-) A-I      intronic chr17:59757709(-) A-I      3'UTR chr17:59898309(-) A-I      intronic chr17:59928182(-) A-I      intronic chr17:59825175(-) A-I      intronic chr17:59889141(-) A-I      intronic chr17:59884238(-) A-I      intronic chr17:59799196(-) A-I      intronic chr17:59792260(-) A-I      intronic chr17:59921423(-) A-I      intronic chr17:59923926(-) A-I      intronic chr17:59789703(-) A-I      intronic chr17:59899031(-) A-I      intronic chr17:59879705(-) A-I      intronic chr17:59790099(-) A-I      intronic chr17:59907508(-) A-I      intronic chr17:59869557(-) A-I      intronic chr17:59867825(-) A-I      intronic chr17:59790102(-) A-I      intronic chr17:59789768(-) A-I      intronic chr17:59917955(-) A-I      intronic chr17:59809346(-) A-I      intronic chr17:59805305(-) A-I      intronic chr17:59923863(-) A-I      intronic chr17:59927944(-) A-I      intronic chr17:59921888(-) A-I      intronic chr17:59805266(-) A-I      intronic chr17:59790179(-) A-I      intronic chr17:59831023(-) A-I      intronic chr17:59868163(-) A-I      intronic chr17:59789134(-) A-I      intronic chr17:59889116(-) A-I      intronic chr17:59923442(-) A-I      intronic chr17:59907477(-) A-I      intronic chr17:59809357(-) A-I      intronic chr17:59766516(-) A-I      intronic chr17:59911759(-) A-I      intronic chr17:59921829(-) A-I      intronic chr17:59766609(-) A-I      intronic chr17:59888772(-) A-I      intronic chr17:59879637(-) A-I      intronic chr17:59911752(-) A-I      intronic chr17:59796841(-) A-I      intronic chr17:59868116(-) A-I      intronic chr17:59764515(-) A-I      intronic chr17:59898229(-) A-I      intronic chr17:59911763(-) A-I      intronic chr17:59869580(-) A-I      intronic chr17:59905485(-) A-I      intronic chr17:59911760(-) A-I      intronic chr17:59898988(-) A-I      intronic chr17:59889191(-) A-I      intronic chr17:59899042(-) A-I      intronic chr17:59836317(-) A-I      intronic chr17:59921321(-) A-I      intronic chr17:59899066(-) A-I      intronic chr17:59775448(-) A-I      intronic chr17:59869570(-) A-I      intronic chr17:59865247(-) A-I      intronic chr17:59923443(-) A-I      intronic chr17:59868112(-) A-I      intronic chr17:59867844(-) A-I      intronic chr17:59867785(-) A-I      intronic chr17:59765790(-) A-I      intronic chr17:59774539(-) A-I      intronic chr17:59917636(-) A-I      intronic chr17:59921463(-) A-I      intronic chr17:59765659(-) A-I      intronic chr17:59825378(-) A-I      intronic chr17:59921406(-) A-I      intronic chr17:59921400(-) A-I      intronic chr17:59790178(-) A-I      intronic chr17:59911761(-) A-I      intronic chr17:59923362(-) A-I      intronic chr17:59804868(-) A-I      intronic chr17:59868103(-) A-I      intronic chr17:59867824(-) A-I      intronic chr17:59888658(-) A-I      intronic chr17:59888856(-) A-I      intronic chr17:59866380(-) A-I      intronic chr17:59797328(-) A-I      intronic chr17:59911796(-) A-I      intronic chr17:59921417(-) A-I      intronic chr17:59923965(-) A-I      intronic chr17:59829227(-) A-I      intronic chr17:59928106(-) A-I      intronic chr17:59836312(-) A-I      intronic chr17:59797496(-) A-I      intronic chr17:59919321(-) A-I      intronic chr17:59797341(-) A-I      intronic chr17:59927526(-) A-I      intronic chr17:59911783(-) A-I      intronic chr17:59774525(-) A-I      intronic chr17:59928080(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	BRIP1	chr17:59760344(-) G-A exon 3'UTR    21725310 chr17:59789703(-) A-G intron -    22484847 chr17:59791499(-) A-G intron -    22484847 chr17:59843066(-) C-A intron -    22484847 chr17:59869549(-) A-G intron -    22484847 chr17:59888772(-) A-G intron -    22484847 chr17:59927526(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BRIP1	chr17:59760550-59760551(-) m6A 3'UTR       27773535//22608085 chr17:59760604-59760605(-) m6A 3'UTR       24209618//24981863//27773535//22608085 chr17:59760701-59760702(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr17:59760708-59760709(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr17:59760730-59760731(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr17:59760740-59760741(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr17:59760746-59760747(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr17:59760763-59760764(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr17:59760883-59760884(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr17:59760900-59760901(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr17:59760952-59760953(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr17:59761001-59761002(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr17:59761039-59761040(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr17:59761067-59761068(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr17:59761101-59761102(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr17:59761136-59761137(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr17:59761192-59761193(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr17:59761224-59761225(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr17:59761273-59761274(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr17:59761294-59761295(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr17:59761379-59761380(-) m6A CDS       24284625//24981863//27773535//22608085 chr17:59761421-59761422(-) m6A CDS       24284625//24981863//27773535//22608085 chr17:59762134-59762135(-) m6A 3'UTR//intron       24981863//22608085 chr17:59762140-59762141(-) m6A 3'UTR//intron       24981863//22608085 chr17:59762209-59762210(-) m6A 3'UTR//intron       22608085 chr17:59763266-59763267(-) m6A CDS       24981863//22608085 chr17:59763390-59763391(-) m6A CDS       24981863//22608085 chr17:59763403-59763404(-) m6A CDS       24981863//22608085 chr17:59763408-59763409(-) m6A CDS       24981863//22608085 chr17:59876537-59876538(-) m6A CDS       24981863 chr17:59876601-59876602(-) m6A CDS       24981863 chr17:59876639-59876640(-) m6A CDS       24981863 chr17:59885997-59885998(-) m6A CDS       24209618//24981863//27773535 chr17:59886071-59886072(-) m6A CDS       24981863//27773535 chr17:59886079-59886080(-) m6A CDS       24981863//27773535 chr17:59924480-59924481(-) m6A CDS       24981863//27773535 chr17:59924506-59924507(-) m6A CDS       24981863 chr17:59924514-59924515(-) m6A CDS       24981863 chr17:59924556-59924557(-) m6A CDS       24981863 chr17:59926500-59926501(-) m6A CDS       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	BRIP1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-9-3p
Interactor2: BRIP1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg