Basic Information:

  VIRBase ID:  

VHID00445388

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-3p:  MIMAT0002185          LARP1:  NM_015315     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-9-3p	LARP1
miRBase Accession/Entrez ID	MIMAT0002185	23367
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Lar1//LARP//Lhp1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LARP1	chr5:154116206(+) A-I      intronic chr5:154116378(+) A-I      intronic chr5:154096206(+) A-I      intronic chr5:154107403(+) A-I      intronic chr5:154107386(+) A-I      intronic chr5:154096048(+) A-I      intronic chr5:154096030(+) A-I      intronic chr5:154115991(+) A-I      intronic chr5:154115977(+) A-I      intronic chr5:154116388(+) A-I      intronic chr5:154116637(+) A-I      intronic chr5:154116664(+) A-I      intronic chr5:154116718(+) A-I      intronic chr5:154116727(+) A-I      intronic chr5:154116758(+) A-I      intronic chr5:154117071(+) A-I      intronic chr5:154117105(+) A-I      intronic chr5:154117119(+) A-I      intronic chr5:154111491(+) A-I      intronic chr5:154144251(+) A-I      intronic chr5:154145192(+) A-I      intronic chr5:154145189(+) A-I      intronic chr5:154144307(+) A-I      intronic chr5:154144289(+) A-I      intronic chr5:154143137(+) A-I      intronic chr5:154143083(+) A-I      intronic chr5:154130435(+) A-I      intronic chr5:154130434(+) A-I      intronic chr5:154130408(+) A-I      intronic chr5:154145036(+) A-I      intronic chr5:154104995(+) A-I      intronic chr5:154143459(+) A-I      intronic chr5:154115918(+) A-I      intronic chr5:154115836(+) A-I      intronic chr5:154145088(+) A-I      intronic chr5:154145201(+) A-I      intronic chr5:154145228(+) A-I      intronic chr5:154142882(+) A-I      intronic chr5:154105561(+) A-I      intronic chr5:154130393(+) A-I      intronic chr5:154117131(+) A-I      intronic chr5:154115580(+) A-I      intronic chr5:154105565(+) A-I      intronic chr5:154112965(+) A-I      intronic chr5:154113303(+) A-I      intronic chr5:154097756(+) A-I      intronic chr5:154097617(+) A-I      intronic chr5:154097577(+) A-I      intronic chr5:154097528(+) A-I      intronic chr5:154192254(+) A-I      intronic chr5:154190282(+) A-I      intronic chr5:154190244(+) A-I      intronic chr5:154189849(+) A-I      intronic chr5:154189838(+) A-I      intronic chr5:154189834(+) A-I      intronic chr5:154189819(+) A-I      intronic chr5:154189763(+) A-I      intronic chr5:154189395(+) A-I      intronic chr5:154178551(+) A-I      intronic chr5:154177454(+) A-I      intronic chr5:154168961(+) A-I      intronic chr5:154113306(+) A-I      intronic chr5:154168909(+) A-I      intronic chr5:154168905(+) A-I      intronic chr5:154168588(+) A-I      intronic chr5:154168562(+) A-I      intronic chr5:154160898(+) A-I      intronic chr5:154143089(+) A-I      intronic chr5:154159268(+) A-I      intronic chr5:154159198(+) A-I      intronic chr5:154159091(+) A-I      intronic chr5:154157658(+) A-I      intronic chr5:154157644(+) A-I      intronic chr5:154113308(+) A-I      intronic chr5:154096209(+) A-I      intronic chr5:154096569(+) A-I      intronic chr5:154104437(+) A-I      intronic chr5:154119159(+) A-I      intronic chr5:154118427(+) A-I      intronic chr5:154143453(+) A-I      intronic chr5:154121867(+) A-I      intronic chr5:154121860(+) A-I      intronic chr5:154119544(+) A-I      intronic chr5:154139599(+) A-I      intronic chr5:154105501(+) A-I      intronic chr5:154144255(+) A-I      intronic chr5:154118424(+) A-I      intronic chr5:154118426(+) A-I      intronic chr5:154143927(+) A-I      intronic chr5:154116026(+) A-I      intronic chr5:154111471(+) A-I      intronic chr5:154115756(+) A-I      intronic chr5:154099215(+) A-I      intronic chr5:154099257(+) A-I      intronic chr5:154100079(+) A-I      intronic chr5:154100129(+) A-I      intronic chr5:154100197(+) A-I      intronic chr5:154100206(+) A-I      intronic chr5:154100784(+) A-I      intronic chr5:154107441(+) A-I      intronic chr5:154107583(+) A-I      intronic chr5:154107603(+) A-I      intronic chr5:154109849(+) A-I      intronic chr5:154109850(+) A-I      intronic chr5:154109861(+) A-I      intronic chr5:154114776(+) A-I      intronic chr5:154113648(+) A-I      intronic chr5:154118421(+) A-I      intronic chr5:154118361(+) A-I      intronic chr5:154117154(+) A-I      intronic chr5:154117138(+) A-I      intronic chr5:154154974(+) A-I      intronic chr5:154155679(+) A-I      intronic chr5:154155694(+) A-I      intronic chr5:154121946(+) A-I      intronic chr5:154122215(+) A-I      intronic chr5:154122219(+) A-I      intronic chr5:154122969(+) A-I      intronic chr5:154123034(+) A-I      intronic chr5:154123066(+) A-I      intronic chr5:154123071(+) A-I      intronic chr5:154125536(+) A-I      intronic chr5:154126344(+) A-I      intronic chr5:154126349(+) A-I      intronic chr5:154127096(+) A-I      intronic chr5:154127345(+) A-I      intronic chr5:154127369(+) A-I      intronic chr5:154127548(+) A-I      intronic chr5:154127645(+) A-I      intronic chr5:154130067(+) A-I      intronic chr5:154130216(+) A-I      intronic chr5:154130237(+) A-I      intronic chr5:154141547(+) A-I      intronic chr5:154141562(+) A-I      intronic chr5:154141660(+) A-I      intronic chr5:154141692(+) A-I      intronic chr5:154141696(+) A-I      intronic chr5:154141744(+) A-I      intronic chr5:154142720(+) A-I      intronic chr5:154142725(+) A-I      intronic chr5:154142746(+) A-I      intronic chr5:154142844(+) A-I      intronic chr5:154190222(+) A-I      intronic chr5:154097595(+) A-I      intronic chr5:154144046(+) A-I      intronic chr5:154190079(+) A-I      intronic chr5:154142690(+) A-I      intronic chr5:154142646(+) A-I      intronic chr5:154126571(+) A-I      intronic chr5:154123233(+) A-I      intronic chr5:154143333(+) A-I      intronic chr5:154189980(+) A-I      intronic chr5:154096364(+) A-I      intronic chr5:154131632(+) A-I      intronic chr5:154115675(+) A-I      intronic chr5:154096460(+) A-I      intronic chr5:154122074(+) A-I      intronic chr5:154126343(+) A-I      intronic chr5:154096552(+) A-I      intronic chr5:154113035(+) A-I      intronic chr5:154139580(+) A-I      intronic chr5:154156846(+) A-I      intronic chr5:154126537(+) A-I      intronic chr5:154127518(+) A-I      intronic chr5:154122202(+) A-I      intronic chr5:154190230(+) A-I      intronic chr5:154177505(+) A-I      intronic chr5:154168615(+) A-I      intronic chr5:154097578(+) A-I      intronic chr5:154144014(+) A-I      intronic chr5:154143332(+) A-I      intronic chr5:154150508(+) A-I      intronic chr5:154096459(+) A-I      intronic chr5:154188799(+) A-I      intronic chr5:154160525(+) A-I      intronic chr5:154110089(+) A-I      intronic chr5:154131638(+) A-I      intronic chr5:154113370(+) A-I      intronic chr5:154110224(+) A-I      intronic chr5:154155664(+) A-I      intronic chr5:154125539(+) A-I      intronic chr5:154189498(+) A-I      intronic chr5:154144215(+) A-I      intronic chr5:154142760(+) A-I      intronic chr5:154145137(+) A-I      intronic chr5:154144362(+) A-I      intronic chr5:154144274(+) A-I      intronic chr5:154189771(+) A-I      intronic chr5:154148502(+) A-I      intronic chr5:154168609(+) A-I      intronic chr5:154118655(+) A-I      intronic chr5:154168612(+) A-I      intronic chr5:154121800(+) A-I      intronic chr5:154132891(+) A-I      intronic chr5:154143454(+) A-I      intronic chr5:154094528(+) A-I      intronic chr5:154119905(+) A-I      intronic chr5:154141682(+) A-I      intronic chr5:154141546(+) A-I      intronic chr5:154143944(+) A-I      intronic chr5:154132912(+) A-I      intronic chr5:154105016(+) A-I      intronic chr5:154154641(+) A-I      intronic chr5:154104696(+) A-I      intronic chr5:154143613(+) A-I      intronic chr5:154150525(+) A-I      intronic chr5:154139682(+) A-I      intronic chr5:154144086(+) A-I      intronic chr5:154116665(+) A-I      intronic chr5:154142762(+) A-I      intronic chr5:154141590(+) A-I      intronic chr5:154189875(+) A-I      intronic chr5:154189449(+) A-I      intronic chr5:154177428(+) A-I      intronic chr5:154141619(+) A-I      intronic chr5:154139777(+) A-I      intronic chr5:154096134(+) A-I      intronic chr5:154154954(+) A-I      intronic chr5:154122143(+) A-I      intronic chr5:154145182(+) A-I      intronic chr5:154115701(+) A-I      intronic chr5:154122029(+) A-I      intronic chr5:154142645(+) A-I      intronic chr5:154127612(+) A-I      intronic chr5:154126321(+) A-I      intronic chr5:154143432(+) A-I      intronic chr5:154142805(+) A-I      intronic chr5:154105622(+) A-I      intronic chr5:154177518(+) A-I      intronic chr5:154113017(+) A-I      intronic chr5:154142747(+) A-I      intronic chr5:154188767(+) A-I      intronic chr5:154131906(+) A-I      intronic chr5:154141552(+) A-I      intronic chr5:154143489(+) A-I      intronic chr5:154142738(+) A-I      intronic chr5:154170805(+) A-I      intronic chr5:154096109(+) A-I      intronic chr5:154122030(+) A-I      intronic chr5:154096358(+) A-I      intronic chr5:154096189(+) A-I      intronic chr5:154104870(+) A-I      intronic chr5:154130094(+) A-I      intronic chr5:154109813(+) A-I      intronic chr5:154096139(+) A-I      intronic chr5:154168517(+) A-I      intronic chr5:154096387(+) A-I      intronic chr5:154119538(+) A-I      intronic chr5:154143915(+) A-I      intronic chr5:154168596(+) A-I      intronic chr5:154145101(+) A-I      intronic chr5:154130187(+) A-I      intronic chr5:154122039(+) A-I      intronic chr5:154130106(+) A-I      intronic chr5:154105062(+) A-I      intronic chr5:154143370(+) A-I      intronic chr5:154130232(+) A-I      intronic chr5:154189405(+) A-I      intronic chr5:154145174(+) A-I      intronic chr5:154143100(+) A-I      intronic chr5:154115773(+) A-I      intronic chr5:154105465(+) A-I      intronic chr5:154143290(+) A-I      intronic chr5:154168611(+) A-I      intronic chr5:154190141(+) A-I      intronic chr5:154119194(+) A-I      intronic chr5:154143435(+) A-I      intronic chr5:154168964(+) A-I      intronic chr5:154123143(+) A-I      intronic chr5:154145216(+) A-I      intronic chr5:154099246(+) A-I      intronic chr5:154123197(+) A-I      intronic chr5:154168613(+) A-I      intronic chr5:154168650(+) A-I      intronic chr5:154160502(+) A-I      intronic chr5:154143384(+) A-I      intronic chr5:154145222(+) A-I      intronic chr5:154189892(+) A-I      intronic chr5:154157567(+) A-I      intronic chr5:154168500(+) A-I      intronic chr5:154169055(+) A-I      intronic chr5:154142786(+) A-I      intronic chr5:154096540(+) A-I      intronic chr5:154126981(+) A-I      intronic chr5:154145051(+) A-I      intronic chr5:154096509(+) A-I      intronic chr5:154097539(+) A-I      intronic chr5:154139629(+) A-I      intronic chr5:154141599(+) A-I      intronic chr5:154142884(+) A-I      intronic chr5:154189800(+) A-I      intronic chr5:154188769(+) A-I      intronic chr5:154132077(+) A-I      intronic chr5:154159186(+) A-I      intronic chr5:154127473(+) A-I      intronic chr5:154119810(+) A-I      intronic chr5:154189885(+) A-I      intronic chr5:154094485(+) A-I      intronic chr5:154127119(+) A-I      intronic chr5:154141563(+) A-I      intronic chr5:154170560(+) A-I      intronic chr5:154096633(+) A-I      intronic chr5:154145068(+) A-I      intronic chr5:154104830(+) A-I      intronic chr5:154168547(+) A-I      intronic chr5:154122040(+) A-I      intronic chr5:154145044(+) A-I      intronic chr5:154096138(+) A-I      intronic chr5:154096455(+) A-I      intronic chr5:154143124(+) A-I      intronic chr5:154145095(+) A-I      intronic chr5:154145093(+) A-I      intronic chr5:154142701(+) A-I      intronic chr5:154145083(+) A-I      intronic chr5:154145037(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LARP1	chr5:154094485(+) A-I intron -    15342557 chr5:154094528(+) A-I intron -    15342557 chr5:154095004(+) A-I intron -    15342557 chr5:154096134(+) A-I intron -    15342557 chr5:154096139(+) A-I intron -    15342557 chr5:154096189(+) A-I intron -    15342557 chr5:154096364(+) A-I intron -    15342557 chr5:154096509(+) A-I intron -    15342557 chr5:154096513(+) A-I intron -    15342557 chr5:154096552(+) A-I intron -    15342557 chr5:154119481(+) A-I intron -    22327324 chr5:154119833(+) A-I intron -    22327324 chr5:154094505(+) T-C intron -    22484847 chr5:154094575(+) T-C intron -    22484847 chr5:154096134(+) A-G intron -    22484847 chr5:154097539(+) A-G intron -    22484847 chr5:154097547(+) A-G intron -    22484847 chr5:154097578(+) A-G intron -    22484847 chr5:154097590(+) A-G intron -    22484847 chr5:154097595(+) A-G intron -    22484847 chr5:154099246(+) A-G intron -    22484847 chr5:154104696(+) A-G intron -    22484847 chr5:154104767(+) T-C intron -    22484847 chr5:154105096(+) T-C intron -    22484847 chr5:154105465(+) A-G intron -    22484847 chr5:154105622(+) A-G intron -    22484847 chr5:154110198(+) A-G intron -    22484847 chr5:154110224(+) A-G intron -    22484847 chr5:154113017(+) A-G intron -    22484847 chr5:154115675(+) A-G intron -    22484847 chr5:154115701(+) A-G intron -    22484847 chr5:154115773(+) A-G intron -    22484847 chr5:154116243(+) A-G intron -    22484847 chr5:154116665(+) A-G intron -    22484847 chr5:154116670(+) A-G intron -    22484847 chr5:154118345(+) A-G intron -    22484847 chr5:154119833(+) A-G intron -    22484847 chr5:154122040(+) A-G intron -    22484847 chr5:154123197(+) A-G intron -    22484847 chr5:154125539(+) A-G intron -    22484847 chr5:154126457(+) A-G intron -    22484847 chr5:154127119(+) A-G intron -    22484847 chr5:154127487(+) A-G intron -    22484847 chr5:154127518(+) A-G intron -    22484847 chr5:154127612(+) A-G intron -    22484847 chr5:154130187(+) A-G intron -    22484847 chr5:154131906(+) A-G intron -    22484847 chr5:154131942(+) A-G intron -    22484847 chr5:154139593(+) G-A intron -    22484847 chr5:154141573(+) G-A intron -    22484847 chr5:154141599(+) A-G intron -    22484847 chr5:154141619(+) A-G intron -    22484847 chr5:154141757(+) C-T intron -    22484847 chr5:154141780(+) G-A intron -    22484847 chr5:154142645(+) A-G intron -    22484847 chr5:154142646(+) A-G intron -    22484847 chr5:154142701(+) A-G intron -    22484847 chr5:154142738(+) A-G intron -    22484847 chr5:154142747(+) A-G intron -    22484847 chr5:154142762(+) A-G intron -    22484847 chr5:154143288(+) A-G intron -    22484847 chr5:154143290(+) A-G intron -    22484847 chr5:154143332(+) A-G intron -    22484847 chr5:154143427(+) A-G intron -    22484847 chr5:154143432(+) A-G intron -    22484847 chr5:154143435(+) A-G intron -    22484847 chr5:154143944(+) A-G intron -    22484847 chr5:154143962(+) A-G intron -    22484847 chr5:154144014(+) A-G intron -    22484847 chr5:154145044(+) A-G intron -    22484847 chr5:154145050(+) A-G intron -    22484847 chr5:154145051(+) A-G intron -    22484847 chr5:154145068(+) A-G intron -    22484847 chr5:154145093(+) A-G intron -    22484847 chr5:154145095(+) A-G intron -    22484847 chr5:154145137(+) A-G intron -    22484847 chr5:154145174(+) A-G intron -    22484847 chr5:154145175(+) A-G intron -    22484847 chr5:154145182(+) A-G intron -    22484847 chr5:154148502(+) A-G intron -    22484847 chr5:154157567(+) A-G intron -    22484847 chr5:154157572(+) A-G intron -    22484847 chr5:154159132(+) A-G intron -    22484847 chr5:154159133(+) A-G intron -    22484847 chr5:154159199(+) A-G intron -    22484847 chr5:154160360(+) A-G intron -    22484847 chr5:154160525(+) A-G intron -    22484847 chr5:154168547(+) A-G intron -    22484847 chr5:154168611(+) A-G intron -    22484847 chr5:154168612(+) A-G intron -    22484847 chr5:154168962(+) A-G intron -    22484847 chr5:154177505(+) A-G intron -    22484847 chr5:154177506(+) A-G intron -    22484847 chr5:154189474(+) A-G intron -    22484847 chr5:154189809(+) A-G intron -    22484847 chr5:154189810(+) A-G intron -    22484847 chr5:154189831(+) A-G intron -    22484847 chr5:154189875(+) A-G intron -    22484847 chr5:154190079(+) A-G intron -    22484847 chr5:154190141(+) A-G intron -    22484847 chr5:154190148(+) A-G intron -    22484847 chr5:154190222(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LARP1	chr5:154135183-154135184(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr5:154135205-154135206(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr5:154135398-154135399(+) m1A CDS//intron       26863196//26863410 chr5:154135481-154135482(+) m6A CDS//intron       24209618//25456834//27371828//27773536//22575960 chr5:154135660-154135661(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr5:154135690-154135691(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr5:154135698-154135699(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr5:154135739-154135740(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr5:154169927-154169928(+) m6A 5'UTR//CDS       24284625//24209618//24981863//27773535//22575960 chr5:154171519-154171520(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960 chr5:154172213-154172214(+) m6A 3'UTR//5'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr5:154172230-154172231(+) m6A 3'UTR//5'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr5:154172240-154172241(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr5:154172283-154172284(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:154172349-154172350(+) m1A 3'UTR//CDS       26863196 chr5:154173157-154173158(+) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr5:154173187-154173188(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22575960 chr5:154173215-154173216(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22575960 chr5:154173251-154173252(+) m6A 3'UTR//CDS       24284625//24209618//24981863//26404942//27773535//22575960 chr5:154173423-154173424(+) m6A 3'UTR//CDS//intron       24284625//24209618//24981863//26404942//22575960 chr5:154173454-154173455(+) m6A 3'UTR//CDS//intron       24284625//24981863//22575960 chr5:154179160-154179161(+) m6A CDS//exon       26404942 chr5:154179209-154179210(+) m6A CDS//exon       26404942 chr5:154179252-154179253(+) m6A CDS//exon       26404942 chr5:154179315-154179316(+) m6A CDS//exon       26404942//22575960 chr5:154179479-154179480(+) m6A CDS//exon       22575960 chr5:154179503-154179504(+) m6A CDS//exon       22575960 chr5:154179552-154179553(+) m6A CDS//exon       22575960 chr5:154179561-154179562(+) Am CDS//exon       - chr5:154181661-154181662(+) m6A CDS       25456834//24981863//26404942//22608085 chr5:154181711-154181712(+) m6A CDS       24209618//25456834//24981863//26404942//22608085 chr5:154181794-154181795(+) m6A CDS       24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:154181828-154181829(+) m6A CDS       24209618//24981863//26404942//27773535//22575960//22608085 chr5:154181871-154181872(+) m6A CDS       24209618//24981863//26404942//22575960//22608085 chr5:154181915-154181916(+) m6A CDS       24209618//24981863//26404942//22575960//22608085 chr5:154181937-154181938(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr5:154181950-154181951(+) Cm CDS       - chr5:154182862-154182863(+) m6A CDS       24284625//24209618//24981863//26404942//22575960 chr5:154183192-154183193(+) m6A CDS       24284625//24981863//26404942//27773535//22575960 chr5:154183209-154183210(+) m6A CDS       24284625//24981863//26404942//27773535//22575960 chr5:154183227-154183228(+) m6A CDS       24284625//24981863//26404942//27773535//22575960 chr5:154183243-154183244(+) m6A CDS       24284625//24981863//26404942//27773535//22575960 chr5:154183254-154183255(+) m6A CDS       24284625//24981863//26404942//27773535//22575960 chr5:154183290-154183291(+) m6A CDS       24284625//24981863//26404942//27773535//22575960 chr5:154183778-154183779(+) m6A CDS       24284625//24981863//26404942//27773535//22575960 chr5:154183783-154183784(+) m6A CDS       24284625//24981863//26404942//27773535//22575960 chr5:154183794-154183795(+) m6A CDS       24284625//24981863//22575960 chr5:154191135-154191136(+) m6A CDS//exon       24284625 chr5:154191148-154191149(+) m6A CDS//exon       24284625 chr5:154191186-154191187(+) m6A CDS//exon       24284625//24209618//24981863//22575960 chr5:154193617-154193618(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154193633-154193634(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154193641-154193642(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:154193740-154193741(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154193751-154193752(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154193771-154193772(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr5:154194249-154194250(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr5:154194264-154194265(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr5:154194360-154194361(+) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chr5:154194437-154194438(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr5:154194456-154194457(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr5:154194482-154194483(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:154194671-154194672(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:154194693-154194694(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:154194903-154194904(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154194926-154194927(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154194937-154194938(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154194959-154194960(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154195011-154195012(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154195067-154195068(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr5:154195206-154195207(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr5:154195284-154195285(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:154195399-154195400(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:154195413-154195414(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:154195570-154195571(+) m6A 3'UTR       24284625//27773535 chr5:154195619-154195620(+) Y 3'UTR       26075521 chr5:154195710-154195711(+) m6A 3'UTR       24284625 chr5:154195798-154195799(+) m6A 3'UTR       24284625//27773535 chr5:154195813-154195814(+) m6A 3'UTR       24284625//27773535 chr5:154196285-154196286(+) m6A 3'UTR       26404942 chr5:154196376-154196377(+) m6A 3'UTR       24284625 chr5:154196668-154196669(+) m6A 3'UTR       26404942 chr5:154196763-154196764(+) m6A 3'UTR       26404942//27773535//22575960 chr5:154196976-154196977(+) m6A 3'UTR       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LARP1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-9-3p
Interactor2: LARP1

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	miRanda//PARalyzer//Targetscan
Support Database	ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.