Detail Information

Basic Information:


  VIRBase ID:  

VHID00445173

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.9124

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-3p:           ZFYVE9:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-9-3p ZFYVE9
miRBase
Accession/Entrez ID
MIMAT0002185 9372
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - MADHIP//NSP//PPP1R173//SARA//SMADIP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZFYVE9
chr1:52809301(+) A-I      intronic
chr1:52809385(+) A-I      intronic
chr1:52780329(+) A-I      intronic
chr1:52780325(+) A-I      intronic
chr1:52777608(+) A-I      intronic
chr1:52777599(+) A-I      intronic
chr1:52777597(+) A-I      intronic
chr1:52776679(+) A-I      intronic
chr1:52776677(+) A-I      intronic
chr1:52775748(+) A-I      intronic
chr1:52775737(+) A-I      intronic
chr1:52774121(+) A-I      intronic
chr1:52777527(+) A-I      intronic
chr1:52766030(+) A-I      intronic
chr1:52766031(+) A-I      intronic
chr1:52766052(+) A-I      intronic
chr1:52793525(+) A-I      intronic
chr1:52698162(+) A-I      intronic
chr1:52774106(+) A-I      intronic
chr1:52698154(+) A-I      intronic
chr1:52698124(+) A-I      intronic
chr1:52698168(+) A-I      intronic
chr1:52698181(+) A-I      intronic
chr1:52808353(+) A-I      intronic
chr1:52780330(+) A-I      intronic
chr1:52780416(+) A-I      intronic
chr1:52766066(+) A-I      intronic
chr1:52780417(+) A-I      intronic
chr1:52791078(+) A-I      intronic
chr1:52664938(+) A-I      intronic
chr1:52791125(+) A-I      intronic
chr1:52791147(+) A-I      intronic
chr1:52664867(+) A-I      intronic
chr1:52664877(+) A-I      intronic
chr1:52793535(+) A-I      intronic
chr1:52793552(+) A-I      intronic
chr1:52809285(+) A-I      intronic
chr1:52766086(+) A-I      intronic
chr1:52774074(+) A-I      intronic
chr1:52774068(+) A-I      intronic
chr1:52770981(+) A-I      intronic
chr1:52770986(+) A-I      intronic
chr1:52770936(+) A-I      intronic
chr1:52774120(+) A-I      intronic
chr1:52809299(+) A-I      intronic
chr1:52793571(+) A-I      intronic
chr1:52793578(+) A-I      intronic
chr1:52808337(+) A-I      intronic
chr1:52808347(+) A-I      intronic
chr1:52784663(+) A-I      intronic
chr1:52785454(+) A-I      intronic
chr1:52785462(+) A-I      intronic
chr1:52785514(+) A-I      intronic
chr1:52785591(+) A-I      intronic
chr1:52785985(+) A-I      intronic
chr1:52790696(+) A-I      intronic
chr1:52809659(+) A-I      intronic
chr1:52809676(+) A-I      intronic
chr1:52776704(+) A-I      intronic
chr1:52809699(+) A-I      intronic
chr1:52790703(+) A-I      intronic
chr1:52773992(+) A-I      intronic
chr1:52773965(+) A-I      intronic
chr1:52791107(+) A-I      intronic
chr1:52791112(+) A-I      intronic
chr1:52791118(+) A-I      intronic
chr1:52792766(+) A-I      intronic
chr1:52792790(+) A-I      intronic
chr1:52795917(+) A-I      intronic
chr1:52795924(+) A-I      intronic
chr1:52795927(+) A-I      intronic
chr1:52795937(+) A-I      intronic
chr1:52801581(+) A-I      intronic
chr1:52801686(+) A-I      intronic
chr1:52801691(+) A-I      intronic
chr1:52801702(+) A-I      intronic
chr1:52802228(+) A-I      intronic
chr1:52802283(+) A-I      intronic
chr1:52804684(+) A-I      intronic
chr1:52773953(+) A-I      intronic
chr1:52781060(+) A-I      intronic
chr1:52776590(+) A-I      intronic
chr1:52776566(+) A-I      intronic
chr1:52776166(+) A-I      intronic
chr1:52775793(+) A-I      intronic
chr1:52775785(+) A-I      intronic
chr1:52775783(+) A-I      intronic
chr1:52774998(+) A-I      intronic
chr1:52774971(+) A-I      intronic
chr1:52774947(+) A-I      intronic
chr1:52774894(+) A-I      intronic
chr1:52774059(+) A-I      intronic
chr1:52773938(+) A-I      intronic
chr1:52773183(+) A-I      intronic
chr1:52773152(+) A-I      intronic
chr1:52773020(+) A-I      intronic
chr1:52772969(+) A-I      intronic
chr1:52772947(+) A-I      intronic
chr1:52770937(+) A-I      intronic
chr1:52614110(+) A-I      intronic
chr1:52622634(+) A-I      intronic
chr1:52629381(+) A-I      intronic
chr1:52629385(+) A-I      intronic
chr1:52634157(+) A-I      intronic
chr1:52634160(+) A-I      intronic
chr1:52634801(+) A-I      intronic
chr1:52634817(+) A-I      intronic
chr1:52645051(+) A-I      intronic
chr1:52645052(+) A-I      intronic
chr1:52645277(+) A-I      intronic
chr1:52649367(+) A-I      intronic
chr1:52649398(+) A-I      intronic
chr1:52649416(+) A-I      intronic
chr1:52654809(+) A-I      intronic
chr1:52654811(+) A-I      intronic
chr1:52770935(+) A-I      intronic
chr1:52770140(+) A-I      intronic
chr1:52656873(+) A-I      intronic
chr1:52776773(+) A-I      intronic
chr1:52662258(+) A-I      intronic
chr1:52664912(+) A-I      intronic
chr1:52664921(+) A-I      intronic
chr1:52664924(+) A-I      intronic
chr1:52676453(+) A-I      intronic
chr1:52676456(+) A-I      intronic
chr1:52676466(+) A-I      intronic
chr1:52677232(+) A-I      intronic
chr1:52677242(+) A-I      intronic
chr1:52713374(+) A-I      intronic
chr1:52718112(+) A-I      intronic
chr1:52718149(+) A-I      intronic
chr1:52720679(+) A-I      intronic
chr1:52736138(+) A-I      intronic
chr1:52736143(+) A-I      intronic
chr1:52738441(+) A-I      intronic
chr1:52745215(+) A-I      intronic
chr1:52745235(+) A-I      intronic
chr1:52745236(+) A-I      intronic
chr1:52745417(+) A-I      intronic
chr1:52745816(+) A-I      intronic
chr1:52745921(+) A-I      intronic
chr1:52746007(+) A-I      intronic
chr1:52751553(+) A-I      intronic
chr1:52751626(+) A-I      intronic
chr1:52751640(+) A-I      intronic
chr1:52751641(+) A-I      intronic
chr1:52751649(+) A-I      intronic
chr1:52752941(+) A-I      intronic
chr1:52753345(+) A-I      intronic
chr1:52770115(+) A-I      intronic
chr1:52762662(+) A-I      intronic
chr1:52762608(+) A-I      intronic
chr1:52762572(+) A-I      intronic
chr1:52757807(+) A-I      intronic
chr1:52757316(+) A-I      intronic
chr1:52757301(+) A-I      intronic
chr1:52753349(+) A-I      intronic
chr1:52754459(+) A-I      intronic
chr1:52754495(+) A-I      intronic
chr1:52780377(+) A-I      intronic
chr1:52780371(+) A-I      intronic
chr1:52780345(+) A-I      intronic
chr1:52780342(+) A-I      intronic
chr1:52780280(+) A-I      intronic
chr1:52777562(+) A-I      intronic
chr1:52806317(+) A-I      intronic
chr1:52806366(+) A-I      intronic
chr1:52806370(+) A-I      intronic
chr1:52806388(+) A-I      intronic
chr1:52806706(+) A-I      intronic
chr1:52806707(+) A-I      intronic
chr1:52807993(+) A-I      intronic
chr1:52808018(+) A-I      intronic
chr1:52808288(+) A-I      intronic
chr1:52809100(+) A-I      intronic
chr1:52777494(+) A-I      intronic
chr1:52780393(+) A-I      intronic
chr1:52776776(+) A-I      intronic
chr1:52781057(+) A-I      intronic
chr1:52809166(+) A-I      intronic
chr1:52809241(+) A-I      intronic
chr1:52809317(+) A-I      intronic
chr1:52809519(+) A-I      intronic
chr1:52809542(+) A-I      intronic
chr1:52809543(+) A-I      intronic
chr1:52809557(+) A-I      intronic
chr1:52809568(+) A-I      intronic
chr1:52809647(+) A-I      intronic
chr1:52777524(+) A-I      intronic
chr1:52805143(+) A-I      intronic
chr1:52782091(+) A-I      intronic
chr1:52766250(+) A-I      intronic
chr1:52808874(+) A-I      intronic
chr1:52654861(+) A-I      intronic
chr1:52643005(+) A-I      intronic
chr1:52808002(+) A-I      intronic
chr1:52777737(+) A-I      intronic
chr1:52634317(+) A-I      intronic
chr1:52649446(+) A-I      intronic
chr1:52721110(+) A-I      intronic
chr1:52766671(+) A-I      intronic
chr1:52762979(+) A-I      intronic
chr1:52808360(+) A-I      intronic
chr1:52697413(+) A-I      intronic
chr1:52806452(+) A-I      intronic
chr1:52616341(+) A-I      intronic
chr1:52780900(+) A-I      intronic
chr1:52801542(+) A-I      intronic
chr1:52670913(+) A-I      intronic
chr1:52792462(+) A-I      intronic
chr1:52785565(+) A-I      intronic
chr1:52808395(+) A-I      intronic
chr1:52644040(+) A-I      intronic
chr1:52774048(+) A-I      intronic
chr1:52780314(+) A-I      intronic
chr1:52808801(+) A-I      intronic
chr1:52809213(+) A-I      intronic
chr1:52806434(+) A-I      intronic
chr1:52721136(+) A-I      intronic
chr1:52758285(+) A-I      intronic
chr1:52762522(+) A-I      intronic
chr1:52766100(+) A-I      intronic
chr1:52650571(+) A-I      intronic
chr1:52785574(+) A-I      intronic
chr1:52804536(+) A-I      intronic
chr1:52753457(+) A-I      intronic
chr1:52796597(+) A-I      intronic
chr1:52679992(+) A-I      intronic
chr1:52772972(+) A-I      intronic
chr1:52766142(+) A-I      intronic
chr1:52785635(+) A-I      intronic
chr1:52763469(+) A-I      intronic
chr1:52806505(+) A-I      intronic
chr1:52768662(+) A-I      intronic
chr1:52806316(+) A-I      intronic
chr1:52785916(+) A-I      intronic
chr1:52806668(+) A-I      intronic
chr1:52782005(+) A-I      intronic
chr1:52776650(+) A-I      intronic
chr1:52614765(+) A-I      intronic
chr1:52802090(+) A-I      intronic
chr1:52808478(+) A-I      intronic
chr1:52802305(+) A-I      intronic
chr1:52781583(+) A-I      intronic
chr1:52806422(+) A-I      intronic
chr1:52751577(+) A-I      intronic
chr1:52808369(+) A-I      intronic
chr1:52649997(+) A-I      intronic
chr1:52762618(+) A-I      intronic
chr1:52770997(+) A-I      intronic
chr1:52780441(+) A-I      intronic
chr1:52795773(+) A-I      intronic
chr1:52768679(+) A-I      intronic
chr1:52763606(+) A-I      intronic
chr1:52763475(+) A-I      intronic
chr1:52732031(+) A-I      intronic
chr1:52789866(+) A-I      intronic
chr1:52776721(+) A-I      intronic
chr1:52809353(+) A-I      intronic
chr1:52762640(+) A-I      intronic
chr1:52777598(+) A-I      intronic
chr1:52801695(+) A-I      intronic
chr1:52649452(+) A-I      intronic
chr1:52736679(+) A-I      intronic
chr1:52775831(+) A-I      intronic
chr1:52720643(+) A-I      intronic
chr1:52685710(+) A-I      intronic
chr1:52796817(+) A-I      intronic
chr1:52766017(+) A-I      intronic
chr1:52773901(+) A-I      intronic
chr1:52808388(+) A-I      intronic
chr1:52808659(+) A-I      intronic
chr1:52804498(+) A-I      intronic
chr1:52776194(+) A-I      intronic
chr1:52699532(+) A-I      intronic
chr1:52774081(+) A-I      intronic
chr1:52768372(+) A-I      intronic
chr1:52634353(+) A-I      intronic
chr1:52785925(+) A-I      intronic
chr1:52745793(+) A-I      intronic
chr1:52775694(+) A-I      intronic
chr1:52780909(+) A-I      intronic
chr1:52762699(+) A-I      intronic
chr1:52774093(+) A-I      intronic
chr1:52634361(+) A-I      intronic
chr1:52632457(+) A-I      intronic
chr1:52776728(+) A-I      intronic
chr1:52797374(+) A-I      intronic
chr1:52773137(+) A-I      intronic
chr1:52721444(+) A-I      intronic
chr1:52809335(+) A-I      intronic
chr1:52625597(+) A-I      intronic
chr1:52802163(+) A-I      intronic
chr1:52806565(+) A-I      intronic
chr1:52762644(+) A-I      intronic
chr1:52764742(+) A-I      intronic
chr1:52806386(+) A-I      intronic
chr1:52776185(+) A-I      intronic
chr1:52750298(+) A-I      intronic
chr1:52774915(+) A-I      intronic
chr1:52634354(+) A-I      intronic
chr1:52782078(+) A-I      intronic
chr1:52752968(+) A-I      intronic
chr1:52752913(+) A-I      intronic
chr1:52763495(+) A-I      intronic
chr1:52802231(+) A-I      intronic
chr1:52773177(+) A-I      intronic
chr1:52750290(+) A-I      intronic
chr1:52763560(+) A-I      intronic
chr1:52768208(+) A-I      intronic
chr1:52804500(+) A-I      intronic
chr1:52768617(+) A-I      intronic
chr1:52809558(+) A-I      intronic
chr1:52762537(+) A-I      intronic
chr1:52805201(+) A-I      intronic
chr1:52768312(+) A-I      intronic
chr1:52766061(+) A-I      intronic
chr1:52774094(+) A-I      intronic
chr1:52775030(+) A-I      intronic
chr1:52757775(+) A-I      intronic
chr1:52768302(+) A-I      intronic
chr1:52634378(+) A-I      intronic
chr1:52745293(+) A-I      intronic
chr1:52757887(+) A-I      intronic
chr1:52745993(+) A-I      intronic
chr1:52737651(+) A-I      intronic
chr1:52780145(+) A-I      intronic
chr1:52784515(+) A-I      intronic
chr1:52808127(+) A-I      intronic
chr1:52808971(+) A-I      intronic
chr1:52720630(+) A-I      intronic
chr1:52645183(+) A-I      intronic
chr1:52774963(+) A-I      intronic
chr1:52795835(+) A-I      intronic
chr1:52795866(+) A-I      intronic
chr1:52808967(+) A-I      intronic
chr1:52790543(+) A-I      intronic
chr1:52791065(+) A-I      intronic
chr1:52745370(+) A-I      intronic
chr1:52773098(+) A-I      intronic
chr1:52745931(+) A-I      intronic
chr1:52752914(+) A-I      intronic
chr1:52745363(+) A-I      intronic
chr1:52630071(+) A-I      intronic
chr1:52808931(+) A-I      intronic
chr1:52650458(+) A-I      intronic
chr1:52808067(+) A-I      intronic
chr1:52762623(+) A-I      intronic
chr1:52761224(+) A-I      intronic
chr1:52752990(+) A-I      intronic
chr1:52808779(+) A-I      intronic
chr1:52797044(+) A-I      intronic
chr1:52809313(+) A-I      intronic
chr1:52808856(+) A-I      intronic
chr1:52808987(+) A-I      intronic
chr1:52808997(+) A-I      intronic
chr1:52644517(+) A-I      intronic
chr1:52809007(+) A-I      intronic
chr1:52650515(+) A-I      intronic
chr1:52720617(+) A-I      intronic
chr1:52805152(+) A-I      intronic
chr1:52766606(+) A-I      intronic
chr1:52801628(+) A-I      intronic
chr1:52766156(+) A-I      intronic
chr1:52784585(+) A-I      intronic
chr1:52793493(+) A-I      intronic
chr1:52805146(+) A-I      intronic
chr1:52766044(+) A-I      intronic
chr1:52758930(+) A-I      intronic
chr1:52802498(+) A-I      intronic
chr1:52745323(+) A-I      intronic
chr1:52767238(+) A-I      intronic
chr1:52808001(+) A-I      intronic
chr1:52796603(+) A-I      intronic
chr1:52802252(+) A-I      intronic
chr1:52780466(+) A-I      intronic
chr1:52808334(+) A-I      intronic
chr1:52761140(+) A-I      intronic
chr1:52780544(+) A-I      intronic
chr1:52780444(+) A-I      intronic
chr1:52804616(+) A-I      intronic
chr1:52766195(+) A-I      intronic
chr1:52767136(+) A-I      intronic
chr1:52766767(+) A-I      intronic
chr1:52646458(+) A-I      intronic
chr1:52809070(+) A-I      intronic
chr1:52768575(+) A-I      intronic
chr1:52613636(+) A-I      intronic
chr1:52663927(+) A-I      intronic
chr1:52780346(+) A-I      intronic
chr1:52634453(+) A-I      intronic
chr1:52616332(+) A-I      intronic
chr1:52739341(+) A-I      intronic
chr1:52768731(+) A-I      intronic
chr1:52808153(+) A-I      intronic
chr1:52785882(+) A-I      intronic
chr1:52763494(+) A-I      intronic
chr1:52644137(+) A-I      intronic
chr1:52785141(+) A-I      intronic
chr1:52777066(+) A-I      intronic
chr1:52663923(+) A-I      intronic
chr1:52784648(+) A-I      intronic
chr1:52775743(+) A-I      intronic
chr1:52768567(+) A-I      intronic
chr1:52761171(+) A-I      intronic
chr1:52745270(+) A-I      intronic
chr1:52762547(+) A-I      intronic
chr1:52782037(+) A-I      intronic
chr1:52809097(+) A-I      intronic
chr1:52777643(+) A-I      intronic
chr1:52782009(+) A-I      intronic
chr1:52766715(+) A-I      intronic
chr1:52770953(+) A-I      intronic
chr1:52777563(+) A-I      intronic
chr1:52758273(+) A-I      intronic
chr1:52782077(+) A-I      intronic
chr1:52643767(+) A-I      intronic
chr1:52766806(+) A-I      intronic
chr1:52722233(+) A-I      intronic
chr1:52644186(+) A-I      intronic
chr1:52763459(+) A-I      intronic
chr1:52663958(+) A-I      intronic
chr1:52766035(+) A-I      intronic
chr1:52710710(+) A-I      intronic
chr1:52766097(+) A-I      intronic
chr1:52770927(+) A-I      intronic
chr1:52802496(+) A-I      intronic
chr1:52654877(+) A-I      intronic
chr1:52659288(+) A-I      intronic
chr1:52722179(+) A-I      intronic
chr1:52773008(+) A-I      intronic
chr1:52720517(+) A-I      intronic
chr1:52758344(+) A-I      intronic
chr1:52754447(+) A-I      intronic
chr1:52634456(+) A-I      intronic
chr1:52808077(+) A-I      intronic
chr1:52768630(+) A-I      intronic
chr1:52776735(+) A-I      intronic
chr1:52630066(+) A-I      intronic
chr1:52698125(+) A-I      intronic
chr1:52721078(+) A-I      intronic
chr1:52763556(+) A-I      intronic
chr1:52780953(+) A-I      intronic
chr1:52804429(+) A-I      intronic
chr1:52777566(+) A-I      intronic
chr1:52763512(+) A-I      intronic
chr1:52644168(+) A-I      intronic
chr1:52780512(+) A-I      intronic
chr1:52785025(+) A-I      intronic
chr1:52785617(+) A-I      intronic
chr1:52790804(+) A-I      intronic
chr1:52780082(+) A-I      intronic
chr1:52777519(+) A-I      intronic
chr1:52809670(+) A-I      intronic
chr1:52773106(+) A-I      intronic
chr1:52745216(+) A-I      intronic
chr1:52645195(+) A-I      intronic
chr1:52808391(+) A-I      intronic
chr1:52805197(+) A-I      intronic
chr1:52646494(+) A-I      intronic
chr1:52789464(+) A-I      intronic
chr1:52672351(+) A-I      intronic
chr1:52718657(+) A-I      intronic
chr1:52776638(+) A-I      intronic
chr1:52645185(+) A-I      intronic
chr1:52727010(+) A-I      intronic
chr1:52767100(+) A-I      intronic
chr1:52762530(+) A-I      intronic
chr1:52650477(+) A-I      intronic
chr1:52780940(+) A-I      intronic
chr1:52785689(+) A-I      intronic
chr1:52777624(+) A-I      intronic
chr1:52809227(+) A-I      intronic
chr1:52805210(+) A-I      intronic
chr1:52784775(+) A-I      intronic
chr1:52785606(+) A-I      intronic
chr1:52776099(+) A-I      intronic
chr1:52629404(+) A-I      intronic
chr1:52766632(+) A-I      intronic
chr1:52776664(+) A-I      intronic
chr1:52745265(+) A-I      intronic
chr1:52804508(+) A-I      intronic
chr1:52768671(+) A-I      intronic
chr1:52710674(+) A-I      intronic
chr1:52802158(+) A-I      intronic
chr1:52745972(+) A-I      intronic
chr1:52758403(+) A-I      intronic
chr1:52754422(+) A-I      intronic
chr1:52768368(+) A-I      intronic
chr1:52758180(+) A-I      intronic
chr1:52763534(+) A-I      intronic
chr1:52777592(+) A-I      intronic
chr1:52804632(+) A-I      intronic
chr1:52805090(+) A-I      intronic
chr1:52644269(+) A-I      intronic
chr1:52766133(+) A-I      intronic
chr1:52802260(+) A-I      intronic
chr1:52785409(+) A-I      intronic
chr1:52784638(+) A-I      intronic
chr1:52768581(+) A-I      intronic
chr1:52650494(+) A-I      intronic
chr1:52804627(+) A-I      intronic
chr1:52763608(+) A-I      intronic
chr1:52751182(+) A-I      intronic
chr1:52767166(+) A-I      intronic
chr1:52710654(+) A-I      intronic
chr1:52766636(+) A-I      intronic
chr1:52809307(+) A-I      intronic
chr1:52777521(+) A-I      intronic
chr1:52806512(+) A-I      intronic
chr1:52785630(+) A-I      intronic
chr1:52780548(+) A-I      intronic
chr1:52768620(+) A-I      intronic
chr1:52783098(+) A-I      intronic
chr1:52767114(+) A-I      intronic
chr1:52801610(+) A-I      intronic
chr1:52745167(+) A-I      intronic
chr1:52780534(+) A-I      intronic
chr1:52745415(+) A-I      intronic
chr1:52774965(+) A-I      intronic
chr1:52805127(+) A-I      intronic
chr1:52762555(+) A-I      intronic
chr1:52766721(+) A-I      intronic
chr1:52753983(+) A-I      intronic
chr1:52796668(+) A-I      intronic
chr1:52763531(+) A-I      intronic
chr1:52766563(+) A-I      intronic
chr1:52770857(+) A-I      intronic
chr1:52761055(+) A-I      intronic
chr1:52791071(+) A-I      intronic
chr1:52808610(+) A-I      intronic
chr1:52788106(+) A-I      intronic
chr1:52758208(+) A-I      intronic
chr1:52802214(+) A-I      intronic
chr1:52780455(+) A-I      intronic
chr1:52789865(+) A-I      intronic
chr1:52804524(+) A-I      intronic
chr1:52808708(+) A-I      intronic
chr1:52809252(+) A-I      intronic
chr1:52634815(+) A-I      intronic
chr1:52780887(+) A-I      intronic
chr1:52808149(+) A-I      intronic
chr1:52791088(+) A-I      intronic
chr1:52735955(+) A-I      intronic
chr1:52785042(+) A-I      intronic
chr1:52771216(+) A-I      intronic
chr1:52766595(+) A-I      intronic
chr1:52745977(+) A-I      intronic
chr1:52650040(+) A-I      intronic
chr1:52801523(+) A-I      intronic
chr1:52789437(+) A-I      intronic
chr1:52753416(+) A-I      intronic
chr1:52651447(+) A-I      intronic
chr1:52780381(+) A-I      intronic
chr1:52809173(+) A-I      intronic
chr1:52766141(+) A-I      intronic
chr1:52750365(+) A-I      intronic
chr1:52656886(+) A-I      intronic
chr1:52777580(+) A-I      intronic
chr1:52809373(+) A-I      intronic
chr1:52753982(+) A-I      intronic
chr1:52802266(+) A-I      intronic
chr1:52616233(+) A-I      intronic
chr1:52745403(+) A-I      intronic
chr1:52768303(+) A-I      intronic
chr1:52763629(+) A-I      intronic
chr1:52780588(+) A-I      intronic
chr1:52804572(+) A-I      intronic
chr1:52790883(+) A-I      intronic
chr1:52789847(+) A-I      intronic
chr1:52613714(+) A-I      intronic
chr1:52780304(+) A-I      intronic
chr1:52634429(+) A-I      intronic
chr1:52785508(+) A-I      intronic
chr1:52763498(+) A-I      intronic
chr1:52774924(+) A-I      intronic
chr1:52789467(+) A-I      intronic
chr1:52809374(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZFYVE9
chr1:52763459(+) A-I intron -    15342557
chr1:52763469(+) A-I intron -    15342557
chr1:52763475(+) A-I intron -    15342557
chr1:52763494(+) A-I intron -    15342557
chr1:52763495(+) A-I intron -    15342557
chr1:52763512(+) A-I intron -    15342557
chr1:52763531(+) A-I intron -    15342557
chr1:52763556(+) A-I intron -    15342557
chr1:52763560(+) A-I intron -    15342557
chr1:52763606(+) A-I intron -    15342557
chr1:52763608(+) A-I intron -    15342557
chr1:52764959(+) A-I intron -    15342557
chr1:52626087(+) A-I intron -    22327324
chr1:52616233(+) A-G intron -    22484847
chr1:52643767(+) A-G intron -    22484847
chr1:52644040(+) A-G intron -    22484847
chr1:52644269(+) A-G intron -    22484847
chr1:52650571(+) A-G intron -    22484847
chr1:52720617(+) A-G intron -    22484847
chr1:52720630(+) A-G intron -    22484847
chr1:52731886(+) C-T intron -    22484847
chr1:52745270(+) A-G intron -    22484847
chr1:52745293(+) A-G intron -    22484847
chr1:52758273(+) A-G intron -    22484847
chr1:52758285(+) A-G intron -    22484847
chr1:52761055(+) A-G intron -    22484847
chr1:52761140(+) A-G intron -    22484847
chr1:52761171(+) A-G intron -    22484847
chr1:52763495(+) A-G intron -    22484847
chr1:52763556(+) A-G intron -    22484847
chr1:52763560(+) A-G intron -    22484847
chr1:52770857(+) A-G intron -    22484847
chr1:52770927(+) A-G intron -    22484847
chr1:52775743(+) A-G intron -    22484847
chr1:52777624(+) A-G intron -    22484847
chr1:52796597(+) A-G intron -    22484847
chr1:52805197(+) A-G intron -    22484847
chr1:52808001(+) A-G intron -    22484847
chr1:52808149(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZFYVE9
chr1:52703361-52703362(+) m6A CDS//exon       24284625//24981863//26404942//22608085
chr1:52703366-52703367(+) m6A CDS//exon       24284625//24981863//26404942//22608085
chr1:52703426-52703427(+) m6A CDS//exon       24284625//24981863//26404942//22608085
chr1:52703444-52703445(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085
chr1:52703501-52703502(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr1:52703569-52703570(+) m6A CDS//exon       24209618//24981863//22608085
chr1:52703654-52703655(+) m6A CDS//exon       24284625//24981863//26404942//22608085
chr1:52703662-52703663(+) m6A CDS//exon       24284625//24981863//26404942//22608085
chr1:52703721-52703722(+) m6A CDS//exon       24981863//22608085
chr1:52703742-52703743(+) m6A CDS//exon       22608085
chr1:52703749-52703750(+) m6A CDS//exon       22608085
chr1:52703852-52703853(+) m6A CDS//exon       22608085
chr1:52703911-52703912(+) m6A CDS//exon       24284625//24981863//22608085
chr1:52703945-52703946(+) m6A CDS//exon       24284625//24981863//22608085
chr1:52703963-52703964(+) m6A CDS//exon       24284625//24981863//22608085
chr1:52703992-52703993(+) m6A CDS//exon       24284625//25456834//24981863//22608085
chr1:52704114-52704115(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr1:52704119-52704120(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr1:52704216-52704217(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085
chr1:52704226-52704227(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085
chr1:52704281-52704282(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:52704306-52704307(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:52704377-52704378(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:52704399-52704400(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:52704442-52704443(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085
chr1:52704488-52704489(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085
chr1:52704542-52704543(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:52704568-52704569(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:52704651-52704652(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:52704684-52704685(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:52704695-52704696(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:52704828-52704829(+) m6A CDS//exon       24284625//24981863//22608085
chr1:52704852-52704853(+) m6A CDS//exon       24284625//24981863//22608085
chr1:52704878-52704879(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr1:52704905-52704906(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085
chr1:52704965-52704966(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085
chr1:52705001-52705002(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr1:52705029-52705030(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr1:52705065-52705066(+) m6A CDS//exon       24284625//24209618//24981863//22608085
chr1:52811859-52811860(+) m6A CDS       24981863
chr1:52811882-52811883(+) m6A CDS       24981863
chr1:52811893-52811894(+) m6A 3'UTR       24981863
chr1:52811902-52811903(+) m6A 3'UTR       24981863
chr1:52811923-52811924(+) m6A 3'UTR       24981863
chr1:52811967-52811968(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZFYVE9
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-9-3p
Interactor2: ZFYVE9

Evidence Support:


Strong-Evidence 3'UTR indicator assay
Weak-Evidence Microarray//PAR-CLIP
Prediction-Evidence miRanda//PARalyzer//Targetscan
Support Database ViRBase//VIRmiRNA//VmiReg

References:


[1]PMID 23170179 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line BC-1 cells//BJAB cells Interactor2 expression None
Description Here,we explore the similarities and differences in the functions of miRNA targets from the limited number of experimentally validated miRNA targets and the larger number of targets predicted by recent reports using high-throughput sequencing of RNA isolated by crosslinking immunoprecipitation(HITS-CLIP and PAR-CLIP) (Table 2).Table 2 Validated targets from high-throughput studies. Shown are cellular targets identified by photoactivatable ribonucleoside enhanced crosslinking and immunoprecipitation(PAR-CLIP), High-throughput sequencing of RNA isolated by crosslinking immunoprecipitation and microarray(RIP-Chip)techniques. Validation of these targets was done using luciferase reporter assays.
[2]PMID 22100165 Target region 3'UTR
Source ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line BC-1 cells//BJAB cells Interactor2 expression None
Description Validated interactions included several targets with minimal seed base pairing (NMI, CSNK1A1), several targets that were detected by PAR-CLIP in only one library, targets with ambiguous seed match assignment (e.g. ZFYVE9: miR-K9) and also targets with only one location of T to C conversion events in the relevant cluster (BCL11A, SOS1, WEE1), suggesting that these criteria do not necessary limit successful target validation.
[3]PMID 22174674 Target region None
Source ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line EA.hy926 cells Interactor2 expression Downregulation
Description As KSHV putative direct targets we extracted transcripts that were significantly down-regulated significantly in the replicate experiments, and which contained at least one seed-match to one of the KSHV miRNAs. We identified 704 putative direct targets in DG-75 cells (Figure 3B), and 980 putative direct targets in EA.hy926 cells (Figure 3C). A complete list of putative direct targets can be found in Dataset S2 for DG-75 cells and in Dataset S3 for EA.hy926 cells. The overlap between the two datasets contained 153 putative direct targets (Dataset S4).

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