Basic Information:

  VIRBase ID:  

VHID00444865

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-3p:  MIMAT0002185          MTRR:  NR_157177     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-9-3p	MTRR
miRBase Accession/Entrez ID	MIMAT0002185	4552
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	cblE//MSR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MTRR	chr5:7878292-7878293(+) m6A 3'UTR//CDS       24981863 chr5:7878322-7878323(+) m6A 3'UTR//CDS       24981863 chr5:7885910-7885911(+) Am 3'UTR//CDS//exon       - chr5:7890518-7890519(+) m6A exon//intron       - chr5:7891485-7891486(+) m6A 3'UTR//CDS//exon       - chr5:7891497-7891498(+) m6A 3'UTR//CDS//exon       - chr5:7891509-7891510(+) m6A 3'UTR//CDS//exon       - chr5:7892979-7892980(+) m6A 3'UTR//CDS//exon       - chr5:7893000-7893001(+) m6A 3'UTR//CDS//exon       - chr5:7893088-7893089(+) m6A exon//intron       - chr5:7900101-7900102(+) m6A 3'UTR//CDS//exon       22608085 chr5:7900117-7900118(+) m6A 3'UTR//CDS//exon       24209618//24981863//22608085 chr5:7900172-7900173(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr5:7900243-7900244(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr5:7900290-7900291(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr5:7900329-7900330(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr5:7900470-7900471(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr5:7900481-7900482(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr5:7900520-7900521(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr5:7901089-7901090(+) m6A 3'UTR//intron       27773535 chr5:7901094-7901095(+) m6A 3'UTR//intron       27773535 chr5:7901168-7901169(+) m6A 3'UTR//exon       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MTRR	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-9-3p
Interactor2: MTRR

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg