Basic Information:

  VIRBase ID:  

VHID00444633

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-3p:  MIMAT0002185          PRDM1:  NM_182907     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-9-3p	PRDM1
miRBase Accession/Entrez ID	MIMAT0002185	639
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BLIMP1//PRDI-BF1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PRDM1	chr6:106552182(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PRDM1	chr6:106542634(+) T-C intron -    22484847 chr6:106552182(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PRDM1	chr6:106534217-106534218(+) m6A 5'UTR       - chr6:106534339-106534340(+) m6A 5'UTR       24209618//22575960 chr6:106534397-106534398(+) m6A 5'UTR//intron       24209618 chr6:106534417-106534418(+) m6A 5'UTR//intron       24209618 chr6:106535741-106535742(+) m6A 5'UTR//intron       - chr6:106535748-106535749(+) m6A 5'UTR//intron       - chr6:106535762-106535763(+) m6A 5'UTR//intron       - chr6:106536129-106536130(+) m6A 5'UTR//CDS       - chr6:106536138-106536139(+) m6A 5'UTR//CDS       - chr6:106536151-106536152(+) m6A CDS       - chr6:106536180-106536181(+) m6A CDS       - chr6:106547304-106547305(+) m6A CDS//exon       - chr6:106547347-106547348(+) m6A CDS//exon       24981863 chr6:106547370-106547371(+) m6A CDS//exon       24284625//24981863 chr6:106547443-106547444(+) m6A exon//intron       24284625//24981863 chr6:106547488-106547489(+) m6A exon//intron       24981863 chr6:106547557-106547558(+) m6A exon//intron       24981863 chr6:106547573-106547574(+) m6A exon//intron       24981863 chr6:106552704-106552705(+) m6A CDS       24981863//22575960 chr6:106552745-106552746(+) m6A CDS       24284625//24209618//24981863//22575960 chr6:106552804-106552805(+) m6A CDS       24284625//24209618//24981863//22575960 chr6:106552828-106552829(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr6:106552870-106552871(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr6:106552957-106552958(+) m6A CDS       24284625//24209618//24981863//22575960 chr6:106552994-106552995(+) m6A CDS       24284625//24209618//24981863 chr6:106553149-106553150(+) m6A CDS       24284625//24209618//24981863 chr6:106554907-106554908(+) m6A CDS       24981863//22575960 chr6:106554966-106554967(+) m6A CDS       24209618//25456834//24981863//22575960 chr6:106555008-106555009(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr6:106555190-106555191(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr6:106555218-106555219(+) m6A CDS       24209618//25456834//24981863//22575960 chr6:106555231-106555232(+) m6A CDS       24209618//25456834//24981863//22575960 chr6:106555330-106555331(+) m6A CDS       24209618//25456834//24981863//22575960 chr6:106555337-106555338(+) m6A CDS       24209618//24981863//22575960 chr6:106555345-106555346(+) m6A CDS       24209618//24981863//22575960 chr6:106555373-106555374(+) m6A 3'UTR       24209618//24981863//22575960 chr6:106555507-106555508(+) m6A 3'UTR       24981863//22575960 chr6:106555538-106555539(+) m6A 3'UTR       24981863//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PRDM1	Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-9-3p
Interactor2: PRDM1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg