Basic Information:

  VIRBase ID:  

VHID00444594

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-3p:  MIMAT0002185          ASIC1:  NR_046389     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-9-3p	ASIC1
miRBase Accession/Entrez ID	MIMAT0002185	41
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ACCN2//ASIC//BNaC2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ASIC1	chr12:50473502(+) A-I      intronic chr12:50461464(+) A-I      intronic chr12:50475387(+) A-I      Syn:Leu->Leu chr12:50475424(+) A-I      NonSyn:Thr->Ala chr12:50469995(+) A-I      intronic chr12:50463359(+) A-I      intronic chr12:50465327(+) A-I      intronic chr12:50456281(+) A-I      intronic chr12:50473430(+) A-I      intronic chr12:50456804(+) A-I      intronic chr12:50456850(+) A-I      intronic chr12:50470130(+) A-I      intronic chr12:50456313(+) A-I      intronic chr12:50465529(+) A-I      intronic chr12:50466037(+) A-I      intronic chr12:50456255(+) A-I      intronic chr12:50473509(+) A-I      intronic chr12:50465931(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ASIC1	chr12:50451518-50451519(+) m6A 5'UTR       24209618 chr12:50475106-50475107(+) m6A 3'UTR//CDS       24284625 chr12:50475143-50475144(+) m6A 3'UTR//CDS       24284625//22608085 chr12:50475418-50475419(+) m6A 3'UTR//CDS       24284625//24981863//22608085 chr12:50475449-50475450(+) m6A 3'UTR       24981863//22608085 chr12:50475471-50475472(+) m6A 3'UTR       25456834//24981863//22608085 chr12:50475521-50475522(+) m6A 3'UTR       25456834//24981863 chr12:50475629-50475630(+) m6A 3'UTR//intron       24284625//24981863 chr12:50475645-50475646(+) m6A 3'UTR//intron       24284625//24981863 chr12:50475671-50475672(+) m6A 3'UTR//intron       24284625//24981863 chr12:50475845-50475846(+) m6A 3'UTR//intron       24284625//24981863 chr12:50475910-50475911(+) m6A 3'UTR//intron       24284625 chr12:50475938-50475939(+) m6A 3'UTR//intron       24284625 chr12:50475958-50475959(+) m6A 3'UTR//intron       24284625 chr12:50475964-50475965(+) m6A 3'UTR//intron       24284625 chr12:50476344-50476345(+) m6A 3'UTR//intron       24284625 chr12:50476420-50476421(+) m6A 3'UTR//intron       24284625 chr12:50476504-50476505(+) m6A 3'UTR       24284625 chr12:50477189-50477190(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ASIC1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-9-3p
Interactor2: ASIC1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg