Basic Information:

  VIRBase ID:  

VHID00441997

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-5p:  MIMAT0002184          LRIG1:  NM_015541     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-9-5p	LRIG1
miRBase Accession/Entrez ID	MIMAT0002184	26018
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LIG-1//LIG1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRIG1	chr3:66441621(-) A-I      intronic chr3:66441628(-) A-I      intronic chr3:66441673(-) A-I      intronic chr3:66505582(-) A-I      intronic chr3:66506761(-) A-I      intronic chr3:66505593(-) A-I      intronic chr3:66509190(-) A-I      intronic chr3:66485765(-) A-I      intronic chr3:66509384(-) A-I      intronic chr3:66441684(-) A-I      intronic chr3:66442746(-) A-I      intronic chr3:66515952(-) A-I      intronic chr3:66508739(-) A-I      intronic chr3:66516069(-) A-I      intronic chr3:66485766(-) A-I      intronic chr3:66485780(-) A-I      intronic chr3:66505436(-) A-I      intronic chr3:66505461(-) A-I      intronic chr3:66508616(-) A-I      intronic chr3:66506788(-) A-I      intronic chr3:66506787(-) A-I      intronic chr3:66509258(-) A-I      intronic chr3:66429610(-) A-I      3'UTR chr3:66429408(-) A-I      3'UTR chr3:66429649(-) A-I      3'UTR chr3:66429626(-) A-I      3'UTR chr3:66429624(-) A-I      3'UTR chr3:66429623(-) A-I      3'UTR chr3:66429602(-) A-I      3'UTR chr3:66429598(-) A-I      3'UTR chr3:66429467(-) A-I      3'UTR chr3:66429457(-) A-I      3'UTR chr3:66429453(-) A-I      3'UTR chr3:66429452(-) A-I      3'UTR chr3:66429449(-) A-I      3'UTR chr3:66429443(-) A-I      3'UTR chr3:66429422(-) A-I      3'UTR chr3:66429417(-) A-I      3'UTR chr3:66429414(-) A-I      3'UTR chr3:66429413(-) A-I      3'UTR chr3:66429458(-) A-I      3'UTR chr3:66544103(-) A-I      intronic chr3:66509378(-) A-I      intronic chr3:66524885(-) A-I      intronic chr3:66505447(-) A-I      intronic chr3:66509002(-) A-I      intronic chr3:66539731(-) A-I      intronic chr3:66505441(-) A-I      intronic chr3:66506873(-) A-I      intronic chr3:66524908(-) A-I      intronic chr3:66509014(-) A-I      intronic chr3:66506809(-) A-I      intronic chr3:66524835(-) A-I      intronic chr3:66505642(-) A-I      intronic chr3:66508678(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LRIG1	chr3:66505642(-) A-G intron -    22484847 chr3:66506809(-) A-G intron -    22484847 chr3:66506966(-) A-G intron -    22484847 chr3:66508678(-) A-G intron -    22484847 chr3:66508686(-) A-G intron -    22484847 chr3:66508731(-) A-G intron -    22484847 chr3:66509002(-) A-G intron -    22484847 chr3:66509004(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRIG1	chr3:66430547-66430548(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr3:66430722-66430723(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr3:66430737-66430738(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr3:66430873-66430874(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr3:66430898-66430899(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr3:66431108-66431109(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr3:66431191-66431192(-) m6A CDS//exon       24284625//25456834//27371828//27773536//22608085 chr3:66431223-66431224(-) m6A CDS//exon       24284625//25456834//27371828//27773536//22608085 chr3:66431239-66431240(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22608085 chr3:66431923-66431924(-) m6A CDS//exon       24284625//24981863//27371828 chr3:66434651-66434652(-) m6A CDS//exon       27773535 chr3:66436562-66436563(-) m6A CDS//exon       - chr3:66436571-66436572(-) m6A CDS//exon       - chr3:66436595-66436596(-) m6A CDS//exon       - chr3:66550637-66550638(-) m6A CDS//intron       27773536 chr3:66550673-66550674(-) m6A CDS//intron       27773536 chr3:66550682-66550683(-) m6A CDS//intron       24209618//27773536 chr3:66550835-66550836(-) m6A 5'UTR//intron       27773536 chr3:66550962-66550963(-) m6A 5'UTR//intron       24981863//27773536 chr3:66551333-66551334(-) m6A 5'UTR//intron       27371828//27773536 chr3:66551379-66551380(-) m6A 5'UTR//intron       25456834//27371828//27773536 chr3:66551408-66551409(-) m6A 5'UTR//intron       25456834//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LRIG1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-9-5p
Interactor2: LRIG1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg