Basic Information:

  VIRBase ID:  

VHID00441711

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-9-5p:  MIMAT0002184          ADGRL1:  NM_014921     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-9-5p	ADGRL1
miRBase Accession/Entrez ID	MIMAT0002184	22859
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CIRL1//CL1//LEC2//LPHN1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ADGRL1	chr19:14310504(-) A-I      intronic chr19:14307893(-) A-I      intronic chr19:14299874(-) A-I      intronic chr19:14299836(-) A-I      intronic chr19:14310517(-) A-I      intronic chr19:14310520(-) A-I      intronic chr19:14299855(-) A-I      intronic chr19:14307880(-) A-I      intronic chr19:14299831(-) A-I      intronic chr19:14299873(-) A-I      intronic chr19:14307946(-) A-I      intronic chr19:14307936(-) A-I      intronic chr19:14307929(-) A-I      intronic chr19:14310503(-) A-I      intronic chr19:14310481(-) A-I      intronic chr19:14307308(-) A-I      intronic chr19:14305916(-) A-I      intronic chr19:14305900(-) A-I      intronic chr19:14305726(-) A-I      intronic chr19:14298816(-) A-I      intronic chr19:14298105(-) A-I      intronic chr19:14296305(-) A-I      intronic chr19:14296302(-) A-I      intronic chr19:14295794(-) A-I      intronic chr19:14287798(-) A-I      intronic chr19:14287797(-) A-I      intronic chr19:14287779(-) A-I      intronic chr19:14287054(-) A-I      intronic chr19:14285542(-) A-I      intronic chr19:14284163(-) A-I      intronic chr19:14265508(-) A-I      intronic chr19:14265504(-) A-I      intronic chr19:14265348(-) A-I      intronic chr19:14264751(-) A-I      intronic chr19:14264747(-) A-I      intronic chr19:14264723(-) A-I      intronic chr19:14264715(-) A-I      intronic chr19:14264518(-) A-I      intronic chr19:14264506(-) A-I      intronic chr19:14264388(-) A-I      intronic chr19:14264296(-) A-I      intronic chr19:14264295(-) A-I      intronic chr19:14264293(-) A-I      intronic chr19:14312483(-) A-I      intronic chr19:14305799(-) A-I      intronic chr19:14302583(-) A-I      intronic chr19:14284046(-) A-I      intronic chr19:14302646(-) A-I      intronic chr19:14305970(-) A-I      intronic chr19:14298051(-) A-I      intronic chr19:14295715(-) A-I      intronic chr19:14284105(-) A-I      intronic chr19:14298807(-) A-I      intronic chr19:14307310(-) A-I      intronic chr19:14285927(-) A-I      intronic chr19:14289485(-) A-I      intronic chr19:14284650(-) A-I      intronic chr19:14303190(-) A-I      intronic chr19:14305867(-) A-I      intronic chr19:14285517(-) A-I      intronic chr19:14303231(-) A-I      intronic chr19:14312460(-) A-I      intronic chr19:14295307(-) A-I      intronic chr19:14307274(-) A-I      intronic chr19:14285390(-) A-I      intronic chr19:14303500(-) A-I      intronic chr19:14289361(-) A-I      intronic chr19:14285756(-) A-I      intronic chr19:14295631(-) A-I      intronic chr19:14284496(-) A-I      intronic chr19:14298088(-) A-I      intronic chr19:14289057(-) A-I      intronic chr19:14305825(-) A-I      intronic chr19:14295732(-) A-I      intronic chr19:14307825(-) A-I      intronic chr19:14304151(-) A-I      intronic chr19:14283430(-) A-I      intronic chr19:14300337(-) A-I      intronic chr19:14305805(-) A-I      intronic chr19:14305812(-) A-I      intronic chr19:14283452(-) A-I      intronic chr19:14291459(-) A-I      intronic chr19:14300274(-) A-I      intronic chr19:14285887(-) A-I      intronic chr19:14289286(-) A-I      intronic chr19:14307968(-) A-I      intronic chr19:14296325(-) A-I      intronic chr19:14312353(-) A-I      intronic chr19:14299710(-) A-I      intronic chr19:14312454(-) A-I      intronic chr19:14289574(-) A-I      intronic chr19:14304219(-) A-I      intronic chr19:14300293(-) A-I      intronic chr19:14290601(-) A-I      intronic chr19:14284015(-) A-I      intronic chr19:14284180(-) A-I      intronic chr19:14287894(-) A-I      intronic chr19:14284203(-) A-I      intronic chr19:14307972(-) A-I      intronic chr19:14287825(-) A-I      intronic chr19:14307213(-) A-I      intronic chr19:14284627(-) A-I      intronic chr19:14307333(-) A-I      intronic chr19:14305879(-) A-I      intronic chr19:14283874(-) A-I      intronic chr19:14298824(-) A-I      intronic chr19:14283981(-) A-I      intronic chr19:14307258(-) A-I      intronic chr19:14312478(-) A-I      intronic chr19:14307984(-) A-I      intronic chr19:14302709(-) A-I      intronic chr19:14300284(-) A-I      intronic chr19:14296178(-) A-I      intronic chr19:14287943(-) A-I      intronic chr19:14310365(-) A-I      intronic chr19:14290692(-) A-I      intronic chr19:14307913(-) A-I      intronic chr19:14290125(-) A-I      intronic chr19:14307196(-) A-I      intronic chr19:14303232(-) A-I      intronic chr19:14289311(-) A-I      intronic chr19:14305876(-) A-I      intronic chr19:14299620(-) A-I      intronic chr19:14303501(-) A-I      intronic chr19:14296999(-) A-I      intronic chr19:14308062(-) A-I      intronic chr19:14283916(-) A-I      intronic chr19:14307369(-) A-I      intronic chr19:14307831(-) A-I      intronic chr19:14296968(-) A-I      intronic chr19:14303217(-) A-I      intronic chr19:14298104(-) A-I      intronic chr19:14297116(-) A-I      intronic chr19:14285815(-) A-I      intronic chr19:14310613(-) A-I      intronic chr19:14298112(-) A-I      intronic chr19:14303557(-) A-I      intronic chr19:14296301(-) A-I      intronic chr19:14299837(-) A-I      intronic chr19:14283910(-) A-I      intronic chr19:14305794(-) A-I      intronic chr19:14298794(-) A-I      intronic chr19:14298039(-) A-I      intronic chr19:14298099(-) A-I      intronic chr19:14312367(-) A-I      intronic chr19:14296202(-) A-I      intronic chr19:14303527(-) A-I      intronic chr19:14303627(-) A-I      intronic chr19:14312523(-) A-I      intronic chr19:14295590(-) A-I      intronic chr19:14283968(-) A-I      intronic chr19:14307332(-) A-I      intronic chr19:14303491(-) A-I      intronic chr19:14305835(-) A-I      intronic chr19:14291592(-) A-I      intronic chr19:14289467(-) A-I      intronic chr19:14283840(-) A-I      intronic chr19:14295841(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ADGRL1	chr19:14260516-14260517(-) m6A 3'UTR       - chr19:14260523-14260524(-) m6A 3'UTR       - chr19:14260547-14260548(-) m6A 3'UTR       - chr19:14260554-14260555(-) m6A 3'UTR       - chr19:14260629-14260630(-) m6A 3'UTR       - chr19:14261038-14261039(-) m6A 3'UTR       24284625//24209618//25456834//27371828//22608085 chr19:14261090-14261091(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:14261124-14261125(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:14261151-14261152(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:14261190-14261191(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085 chr19:14261198-14261199(-) m6A 3'UTR       24284625//25456834//24981863//27371828//27773536//22608085 chr19:14261267-14261268(-) m6A 3'UTR       24284625//25456834//22608085 chr19:14261374-14261375(-) m6A 3'UTR       24284625 chr19:14261401-14261402(-) m6A 3'UTR       24284625 chr19:14261425-14261426(-) m6A 3'UTR       24284625//27371828//27773536 chr19:14261494-14261495(-) m6A 3'UTR       24284625//25456834//27371828//27773536 chr19:14261531-14261532(-) m6A 3'UTR       24284625//24209618//25456834//27371828//27773536 chr19:14261607-14261608(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:14261638-14261639(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:14261670-14261671(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:14261913-14261914(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr19:14261931-14261932(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:14261964-14261965(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:14262031-14262032(-) Gm CDS       - chr19:14262107-14262108(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:14262291-14262292(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//22608085 chr19:14262390-14262391(-) m6A CDS       24284625//25456834//27773535//27371828 chr19:14262948-14262949(-) m6A CDS//intron       24284625 chr19:14263020-14263021(-) m6A CDS//intron       24284625 chr19:14263236-14263237(-) m6A CDS       24284625//27773535 chr19:14263333-14263334(-) m6A CDS       24284625//27773535 chr19:14263386-14263387(-) m6A CDS       24284625//27773535 chr19:14263600-14263601(-) m6A CDS       24284625//27773535 chr19:14263639-14263640(-) m6A CDS       24284625//27773535 chr19:14266930-14266931(-) m6A CDS       24284625 chr19:14268758-14268759(-) m6A CDS       - chr19:14268826-14268827(-) m6A CDS       - chr19:14268856-14268857(-) m6A CDS       - chr19:14269180-14269181(-) m6A CDS       - chr19:14269237-14269238(-) m6A CDS       24284625 chr19:14269912-14269913(-) m6A CDS       - chr19:14269925-14269926(-) m6A CDS       - chr19:14269948-14269949(-) m6A CDS       - chr19:14271289-14271290(-) m6A exon//intron       27773536 chr19:14271317-14271318(-) m6A exon//intron       27773536 chr19:14272295-14272296(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536 chr19:14273473-14273474(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr19:14273593-14273594(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:14273740-14273741(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr19:14273831-14273832(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr19:14273900-14273901(-) Am CDS//exon       - chr19:14274043-14274044(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:14274073-14274074(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:14274130-14274131(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr19:14274200-14274201(-) m6A CDS//exon       24284625//24209618//25456834//27371828//27773536//22608085 chr19:14281376-14281377(-) m6A exon//intron       - chr19:14281431-14281432(-) m6A exon//intron       - chr19:14281535-14281536(-) m6A CDS//exon       - chr19:14294433-14294434(-) m6A 5'UTR       27773536 chr19:14316799-14316800(-) m6A 5'UTR       27371828//27773536 chr19:14316830-14316831(-) m6A 5'UTR       27371828//27773536 chr19:14316936-14316937(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ADGRL1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-9-5p
Interactor2: ADGRL1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg