Detail Information
Interactor1 | Interactor2 | |
---|---|---|
Symbol | kshv-miR-K12-9-5p | DEDD |
miRBase Accession/Entrez ID |
MIMAT0002184 | 9191 |
Organism | Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) | Homo sapiens |
Category | miRNA | mRNA |
Alias | - | CASP8IP1//DEDD1//DEFT//FLDED1//KE05 |
Resource | Symbol | Editing Position | Change | Genetic Region | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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RADAR | DEDD |
|
Resource | Symbol | Editing Position | Change | SeqReg | exReg | PMID |
---|---|---|---|---|---|---|
DARNED | DEDD |
Resource | Symbol | ModificationPosition | Type | Genomic Context | PMID | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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RMBase | DEDD |
|
Resource | Symbol | Subcellular Localization | Tissue or Cell Line | PMID | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
RNALocate | DEDD |
|
Interactor1: kshv-miR-K12-9-5p | Interactor2: DEDD |
---|
Weak-Evidence | Microarray | |
---|---|---|
Prediction-Evidence | miRanda//PITA//Targetscan | |
Support Database | ViRBase//VmiReg |
PMID | 22174674 | Target region | None |
---|---|---|---|
Source | ViRBase//VmiReg | Interactor1 expression | None |
Tissue or cell line | EA.hy926 cells | Interactor2 expression | Downregulation |
Description | As KSHV putative direct targets we extracted transcripts that were significantly down-regulated significantly in the replicate experiments, and which contained at least one seed-match to one of the KSHV miRNAs. We identified 704 putative direct targets in DG-75 cells (Figure 3B), and 980 putative direct targets in EA.hy926 cells (Figure 3C). A complete list of putative direct targets can be found in Dataset S2 for DG-75 cells and in Dataset S3 for EA.hy926 cells. The overlap between the two datasets contained 153 putative direct targets (Dataset S4). |