Basic Information:

  VIRBase ID:  

VHID00439600

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-2-5p:  MIMAT0002183          HCN1:  NM_021072     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-2-5p	HCN1
miRBase Accession/Entrez ID	MIMAT0002183	348980
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BCNG-1//BCNG1//DEE24//EIEE24//GEFSP10//HAC-2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HCN1	chr5:45264129(-) A-I      intronic chr5:45611336(-) A-I      intronic chr5:45611333(-) A-I      intronic chr5:45264130(-) A-I      intronic chr5:45537751(-) A-I      intronic chr5:45593955(-) A-I      intronic chr5:45539643(-) A-I      intronic chr5:45540650(-) A-I      intronic chr5:45281965(-) A-I      intronic chr5:45559142(-) A-I      intronic chr5:45265128(-) A-I      intronic chr5:45611538(-) A-I      intronic chr5:45646614(-) A-I      intronic chr5:45562517(-) A-I      intronic chr5:45593956(-) A-I      intronic chr5:45459301(-) A-I      intronic chr5:45611470(-) A-I      intronic chr5:45646613(-) A-I      intronic chr5:45611249(-) A-I      intronic chr5:45540691(-) A-I      intronic chr5:45535592(-) A-I      intronic chr5:45537713(-) A-I      intronic chr5:45281828(-) A-I      intronic chr5:45611449(-) A-I      intronic chr5:45537778(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HCN1	chr5:45262286-45262287(-) m6A CDS       25456834 chr5:45262426-45262427(-) m6A CDS       25456834 chr5:45262459-45262460(-) m6A CDS       25456834 chr5:45262549-45262550(-) m6A CDS       25456834 chr5:45262636-45262637(-) m6A CDS       25456834 chr5:45645569-45645570(-) m6A CDS       24209618 chr5:45645624-45645625(-) m6A CDS       24209618 chr5:45695810-45695811(-) m6A CDS       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HCN1	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-2-5p
Interactor2: HCN1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg