Basic Information:

  VIRBase ID:  

VHID00439121

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-2-5p:  MIMAT0002183          NAV2:  NM_145117     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-2-5p	NAV2
miRBase Accession/Entrez ID	MIMAT0002183	89797
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HELAD1//POMFIL2//RAINB1//STEERIN2//UNC53H2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NAV2	chr11:20130052(+) A-I      intronic chr11:20105747(+) A-I      intronic chr11:19783669(+) A-I      intronic chr11:19784432(+) A-I      intronic chr11:19941430(+) A-I      intronic chr11:19941451(+) A-I      intronic chr11:19941465(+) A-I      intronic chr11:19941484(+) A-I      intronic chr11:19784426(+) A-I      intronic chr11:19783674(+) A-I      intronic chr11:19941498(+) A-I      intronic chr11:19941499(+) A-I      intronic chr11:19941510(+) A-I      intronic chr11:19941525(+) A-I      intronic chr11:19941526(+) A-I      intronic chr11:19941424(+) A-I      intronic chr11:19941416(+) A-I      intronic chr11:19632540(+) A-I      intronic chr11:19632539(+) A-I      intronic chr11:19632538(+) A-I      intronic chr11:19632516(+) A-I      intronic chr11:20135354(+) A-I      intronic chr11:20027541(+) A-I      intronic chr11:20027542(+) A-I      intronic chr11:20028261(+) A-I      intronic chr11:20028277(+) A-I      intronic chr11:19808477(+) A-I      intronic chr11:20028292(+) A-I      intronic chr11:20028318(+) A-I      intronic chr11:20028596(+) A-I      intronic chr11:20028642(+) A-I      intronic chr11:20039779(+) A-I      intronic chr11:20105761(+) A-I      intronic chr11:20105773(+) A-I      intronic chr11:20105827(+) A-I      intronic chr11:20127999(+) A-I      intronic chr11:20128282(+) A-I      intronic chr11:20130092(+) A-I      intronic chr11:20130278(+) A-I      intronic chr11:20015829(+) A-I      intronic chr11:19879544(+) A-I      intronic chr11:19879601(+) A-I      intronic chr11:19879587(+) A-I      intronic chr11:19991336(+) A-I      intronic chr11:19731321(+) A-I      intronic chr11:20028769(+) A-I      intronic chr11:20027589(+) A-I      intronic chr11:19879609(+) A-I      intronic chr11:19879548(+) A-I      intronic chr11:20128375(+) A-I      intronic chr11:20135520(+) A-I      intronic chr11:20135293(+) A-I      intronic chr11:19953935(+) A-I      intronic chr11:19879584(+) A-I      intronic chr11:19879528(+) A-I      intronic chr11:19879568(+) A-I      intronic chr11:19879569(+) A-I      intronic chr11:19879613(+) A-I      intronic chr11:20106502(+) A-I      intronic chr11:19879645(+) A-I      intronic chr11:19879589(+) A-I      intronic chr11:19879555(+) A-I      intronic chr11:19879520(+) A-I      intronic chr11:19879542(+) A-I      intronic chr11:20028385(+) A-I      intronic chr11:19958573(+) A-I      intronic chr11:20135512(+) A-I      intronic chr11:19624971(+) A-I      intronic chr11:19965543(+) A-I      intronic chr11:19808660(+) A-I      intronic chr11:19587839(+) A-I      intronic chr11:19648743(+) A-I      intronic chr11:20015973(+) A-I      intronic chr11:19652342(+) A-I      intronic chr11:19808548(+) A-I      intronic chr11:19808914(+) A-I      intronic chr11:19808936(+) A-I      intronic chr11:19814644(+) A-I      intronic chr11:19814648(+) A-I      intronic chr11:19846592(+) A-I      intronic chr11:19846744(+) A-I      intronic chr11:19849437(+) A-I      intronic chr11:19896532(+) A-I      intronic chr11:19916699(+) A-I      intronic chr11:19941402(+) A-I      intronic chr11:20135348(+) A-I      intronic chr11:19942035(+) A-I      intronic chr11:19942040(+) A-I      intronic chr11:19957683(+) A-I      intronic chr11:19958422(+) A-I      intronic chr11:19958427(+) A-I      intronic chr11:19976918(+) A-I      intronic chr11:19991234(+) A-I      intronic chr11:19991345(+) A-I      intronic chr11:19991361(+) A-I      intronic chr11:19991371(+) A-I      intronic chr11:19991381(+) A-I      intronic chr11:19991989(+) A-I      intronic chr11:20007226(+) A-I      intronic chr11:19941914(+) A-I      intronic chr11:20007331(+) A-I      intronic chr11:20007916(+) A-I      intronic chr11:20008098(+) A-I      intronic chr11:20014273(+) A-I      intronic chr11:20014349(+) A-I      intronic chr11:19625021(+) A-I      intronic chr11:19917997(+) A-I      intronic chr11:19808722(+) A-I      intronic chr11:19860282(+) A-I      intronic chr11:19652232(+) A-I      intronic chr11:19896580(+) A-I      intronic chr11:19958605(+) A-I      intronic chr11:19850092(+) A-I      intronic chr11:19652324(+) A-I      intronic chr11:19965461(+) A-I      intronic chr11:19896582(+) A-I      intronic chr11:19760741(+) A-I      intronic chr11:19562323(+) A-I      intronic chr11:19814635(+) A-I      intronic chr11:20106526(+) A-I      intronic chr11:20007162(+) A-I      intronic chr11:19732107(+) A-I      intronic chr11:20036165(+) A-I      intronic chr11:19732109(+) A-I      intronic chr11:19808472(+) A-I      intronic chr11:19966977(+) A-I      intronic chr11:20128894(+) A-I      intronic chr11:19958464(+) A-I      intronic chr11:19808766(+) A-I      intronic chr11:20028283(+) A-I      intronic chr11:19953905(+) A-I      intronic chr11:19991840(+) A-I      intronic chr11:20039821(+) A-I      intronic chr11:19957440(+) A-I      intronic chr11:19784343(+) A-I      intronic chr11:20129111(+) A-I      intronic chr11:20106479(+) A-I      intronic chr11:19783710(+) A-I      intronic chr11:19846788(+) A-I      intronic chr11:19475921(+) A-I      intronic chr11:19652231(+) A-I      intronic chr11:20130032(+) A-I      intronic chr11:20028763(+) A-I      intronic chr11:20129127(+) A-I      intronic chr11:20039820(+) A-I      intronic chr11:19860274(+) A-I      intronic chr11:19846673(+) A-I      intronic chr11:19625062(+) A-I      intronic chr11:19942107(+) A-I      intronic chr11:19808776(+) A-I      intronic chr11:19965530(+) A-I      intronic chr11:19967126(+) A-I      intronic chr11:19808402(+) A-I      intronic chr11:20014413(+) A-I      intronic chr11:20014401(+) A-I      intronic chr11:19850147(+) A-I      intronic chr11:19991898(+) A-I      intronic chr11:19941934(+) A-I      intronic chr11:19966984(+) A-I      intronic chr11:20105854(+) A-I      intronic chr11:20135297(+) A-I      intronic chr11:19965524(+) A-I      intronic chr11:19896553(+) A-I      intronic chr11:20029879(+) A-I      intronic chr11:19983611(+) A-I      intronic chr11:19991889(+) A-I      intronic chr11:19475922(+) A-I      intronic chr11:20106056(+) A-I      intronic chr11:19919314(+) A-I      intronic chr11:19587685(+) A-I      intronic chr11:19625094(+) A-I      intronic chr11:20014329(+) A-I      intronic chr11:20027576(+) A-I      intronic chr11:20130237(+) A-I      intronic chr11:19497707(+) A-I      intronic chr11:19922837(+) A-I      intronic chr11:19808717(+) A-I      intronic chr11:20028255(+) A-I      intronic chr11:19846561(+) A-I      intronic chr11:19996149(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NAV2	chr11:19879520(+) A-I intron -    22028664 chr11:19879528(+) A-I intron -    22028664 chr11:19879542(+) A-I intron -    22028664 chr11:19879544(+) A-I intron -    22028664 chr11:19879548(+) A-I intron -    22028664 chr11:19879555(+) A-I intron -    22028664 chr11:19879568(+) A-I intron -    22028664 chr11:19879569(+) A-I intron -    22028664 chr11:19879584(+) A-I intron -    22028664 chr11:19879587(+) A-I intron -    22028664 chr11:19879589(+) A-I intron -    22028664 chr11:19879601(+) A-I intron -    22028664 chr11:19879609(+) A-I intron -    22028664 chr11:19879613(+) A-I intron -    22028664 chr11:19879645(+) A-I intron -    22028664 chr11:19470899(+) C-T intron -    22484847 chr11:19470930(+) C-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NAV2	chr11:19372348-19372349(+) m6A 5'UTR       - chr11:19372356-19372357(+) m6A 5'UTR       - chr11:19372396-19372397(+) m6A 5'UTR       - chr11:19735013-19735014(+) m6A 5'UTR//intron       25456834 chr11:19799038-19799039(+) m6A intron       24209618 chr11:19799415-19799416(+) m6A exon//intron       - chr11:19905853-19905854(+) m6A CDS//intron       24284625 chr11:19914028-19914029(+) m6A CDS       24284625 chr11:19914096-19914097(+) m6A CDS       24284625//24981863 chr11:19955007-19955008(+) m6A CDS//exon       24284625//25456834//24981863//22575960 chr11:19955060-19955061(+) m6A CDS//exon       24284625//25456834//24981863//22575960 chr11:19955083-19955084(+) m6A CDS//exon       24284625//25456834//24981863//22575960 chr11:19955197-19955198(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr11:19955262-19955263(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr11:19955297-19955298(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr11:19955333-19955334(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr11:19955357-19955358(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr11:19955487-19955488(+) m6A CDS       24284625//25456834//24981863//22575960 chr11:19955580-19955581(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:19955613-19955614(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:19955668-19955669(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:19955678-19955679(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:19955698-19955699(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:19955719-19955720(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:19955728-19955729(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr11:19961217-19961218(+) m6A CDS       24284625 chr11:19970598-19970599(+) m6A CDS       24284625 chr11:19970606-19970607(+) m6A CDS       24284625 chr11:20005688-20005689(+) m6A CDS       24284625 chr11:20005714-20005715(+) m6A CDS       24284625 chr11:20005749-20005750(+) m6A CDS       24284625 chr11:20044584-20044585(+) m6A 5'UTR//intron       - chr11:20044668-20044669(+) m6A CDS//intron       - chr11:20048867-20048868(+) m6A exon//intron       - chr11:20049213-20049214(+) m6A exon//intron       - chr11:20057551-20057552(+) m6A CDS//exon       - chr11:20065608-20065609(+) m6A CDS//exon       24284625 chr11:20065718-20065719(+) m6A CDS//exon       24284625 chr11:20065805-20065806(+) m6A CDS//exon       24284625 chr11:20065814-20065815(+) m6A CDS//exon       24284625 chr11:20066518-20066519(+) m6A CDS//exon       24284625 chr11:20066647-20066648(+) m6A CDS       24284625//25456834//24981863 chr11:20066869-20066870(+) m6A CDS       24284625//25456834//24981863//22575960 chr11:20066933-20066934(+) m6A CDS       24284625//25456834//24981863//22575960 chr11:20067000-20067001(+) m6A CDS       24284625//25456834//24981863//22575960 chr11:20067019-20067020(+) m6A CDS       24284625//25456834//24981863//22575960 chr11:20067058-20067059(+) m6A CDS       24284625 chr11:20070386-20070387(+) m6A CDS       24284625//24981863 chr11:20070452-20070453(+) m6A CDS       24284625 chr11:20070709-20070710(+) m6A CDS       24284625 chr11:20070724-20070725(+) m6A CDS       24284625 chr11:20071438-20071439(+) m6A CDS//intron       24284625 chr11:20071443-20071444(+) m6A CDS//intron       24284625 chr11:20072854-20072855(+) m6A CDS//intron       24284625 chr11:20072873-20072874(+) m6A CDS//intron       24284625 chr11:20122701-20122702(+) m6A CDS       - chr11:20124849-20124850(+) m6A CDS       - chr11:20124861-20124862(+) m6A CDS       - chr11:20124885-20124886(+) m6A CDS       - chr11:20125221-20125222(+) m6A CDS       - chr11:20139682-20139683(+) m6A CDS//exon       24284625 chr11:20139778-20139779(+) m6A CDS//exon       24284625//24209618//24981863 chr11:20139923-20139924(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960 chr11:20139931-20139932(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960 chr11:20139988-20139989(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr11:20140010-20140011(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr11:20140072-20140073(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:20140125-20140126(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:20140148-20140149(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:20140167-20140168(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:20140172-20140173(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:20140200-20140201(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:20140209-20140210(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:20140227-20140228(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:20140259-20140260(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:20140268-20140269(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:20140322-20140323(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:20140388-20140389(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr11:20140405-20140406(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr11:20140472-20140473(+) m6A 3'UTR       24284625 chr11:20140914-20140915(+) m6A 3'UTR       24284625//24209618//24981863 chr11:20140945-20140946(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr11:20140980-20140981(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:20141048-20141049(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:20141066-20141067(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr11:20141262-20141263(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr11:20141299-20141300(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr11:20141332-20141333(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr11:20141426-20141427(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr11:20141505-20141506(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NAV2	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-2-5p
Interactor2: NAV2

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg