Basic Information:

  VIRBase ID:  

VHID00439019

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-2-5p:  MIMAT0002183          TM2D2:  NM_031940     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-2-5p	TM2D2
miRBase Accession/Entrez ID	MIMAT0002183	83877
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BLP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TM2D2	chr8:38847876(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TM2D2	chr8:38846478-38846479(-) m6A 3'UTR       27773535 chr8:38846548-38846549(-) m6A 3'UTR       27773535 chr8:38846557-38846558(-) m6A 3'UTR       27773535 chr8:38846585-38846586(-) m6A 3'UTR       24981863//27773535 chr8:38847273-38847274(-) m6A 3'UTR       27773535 chr8:38847412-38847413(-) m6A 3'UTR       27773535 chr8:38847455-38847456(-) m6A 3'UTR       27773535 chr8:38847460-38847461(-) m6A 3'UTR       27773535 chr8:38847525-38847526(-) m6A 3'UTR       27773535 chr8:38847742-38847743(-) m6A 3'UTR       27773535 chr8:38847778-38847779(-) m6A 3'UTR       24981863 chr8:38847788-38847789(-) m6A 3'UTR       24981863 chr8:38847872-38847873(-) m6A 3'UTR       24981863 chr8:38847908-38847909(-) m6A 3'UTR       24981863 chr8:38848033-38848034(-) m6A 3'UTR       27773535 chr8:38848261-38848262(-) m6A 3'UTR       24981863//27773535//22608085 chr8:38848288-38848289(-) m6A 3'UTR       24981863//27773535//22608085 chr8:38848425-38848426(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr8:38848509-38848510(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr8:38848605-38848606(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr8:38848700-38848701(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr8:38848759-38848760(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr8:38848777-38848778(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr8:38848940-38848941(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr8:38848982-38848983(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr8:38849054-38849055(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr8:38851074-38851075(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr8:38851094-38851095(-) m6A CDS//exon       24284625//24209618//22608085 chr8:38851149-38851150(-) m6A CDS//exon       24209618 chr8:38852857-38852858(-) m6A CDS//exon       26404942//27773535 chr8:38852897-38852898(-) m6A CDS//exon       26404942//27773535 chr8:38852923-38852924(-) m6A CDS//exon       26404942//27773535 chr8:38852963-38852964(-) m6A CDS//intron       27773535 chr8:38852979-38852980(-) m6A CDS//intron       27773535 chr8:38853026-38853027(-) m6A 5'UTR//intron       24981863//27773535//22608085 chr8:38853036-38853037(-) m6A 5'UTR//intron       24981863//27773535//22608085 chr8:38853041-38853042(-) m6A 5'UTR//intron       24981863//27773535//22608085 chr8:38853139-38853140(-) m6A 5'UTR//exon//intron       24284625//24981863//27773535//22608085 chr8:38853146-38853147(-) m6A 5'UTR//intron       24284625//24981863//27773535//22608085 chr8:38853151-38853152(-) m6A 5'UTR//intron       24284625//24981863//27773535//22608085 chr8:38853180-38853181(-) m6A 5'UTR//intron       24284625//24981863//27773535//22608085 chr8:38853245-38853246(-) m6A 5'UTR//intron       24981863//27773535//22608085 chr8:38853277-38853278(-) m6A 5'UTR//intron       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TM2D2	Chromatin K562 cells     - Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-2-5p
Interactor2: TM2D2

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg