Basic Information:

  VIRBase ID:  

VHID00438330

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-2-5p:  MIMAT0002183          CNIH4:  NR_102347     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-2-5p	CNIH4
miRBase Accession/Entrez ID	MIMAT0002183	29097
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CNIH-4//CNIH2//HSPC163

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CNIH4	chr1:224559483(+) A-I      intronic chr1:224555887(+) A-I      intronic chr1:224547675(+) A-I      intronic chr1:224547688(+) A-I      intronic chr1:224551870(+) A-I      intronic chr1:224552514(+) A-I      intronic chr1:224547647(+) A-I      intronic chr1:224555878(+) A-I      intronic chr1:224555875(+) A-I      intronic chr1:224555872(+) A-I      intronic chr1:224547746(+) A-I      intronic chr1:224560479(+) A-I      intronic chr1:224547681(+) A-I      intronic chr1:224562300(+) A-I      intronic chr1:224547674(+) A-I      intronic chr1:224547648(+) A-I      intronic chr1:224562306(+) A-I      intronic chr1:224560414(+) A-I      intronic chr1:224560338(+) A-I      intronic chr1:224562353(+) A-I      intronic chr1:224555949(+) A-I      intronic chr1:224562354(+) A-I      intronic chr1:224555874(+) A-I      intronic chr1:224555869(+) A-I      intronic chr1:224559624(+) A-I      intronic chr1:224561410(+) A-I      intronic chr1:224562366(+) A-I      intronic chr1:224555775(+) A-I      intronic chr1:224554620(+) A-I      intronic chr1:224554544(+) A-I      intronic chr1:224554251(+) A-I      intronic chr1:224554194(+) A-I      intronic chr1:224554187(+) A-I      intronic chr1:224554183(+) A-I      intronic chr1:224554154(+) A-I      intronic chr1:224554153(+) A-I      intronic chr1:224557073(+) A-I      intronic chr1:224551908(+) A-I      intronic chr1:224549966(+) A-I      intronic chr1:224549863(+) A-I      intronic chr1:224559480(+) A-I      intronic chr1:224549521(+) A-I      intronic chr1:224559455(+) A-I      intronic chr1:224547620(+) A-I      intronic chr1:224559593(+) A-I      intronic chr1:224559444(+) A-I      intronic chr1:224561485(+) A-I      intronic chr1:224561490(+) A-I      intronic chr1:224559430(+) A-I      intronic chr1:224559406(+) A-I      intronic chr1:224559573(+) A-I      intronic chr1:224560476(+) A-I      intronic chr1:224561495(+) A-I      intronic chr1:224559390(+) A-I      intronic chr1:224559389(+) A-I      intronic chr1:224560504(+) A-I      intronic chr1:224561442(+) A-I      intronic chr1:224561538(+) A-I      intronic chr1:224558789(+) A-I      intronic chr1:224558640(+) A-I      intronic chr1:224549515(+) A-I      intronic chr1:224560424(+) A-I      intronic chr1:224562178(+) A-I      intronic chr1:224557561(+) A-I      intronic chr1:224549470(+) A-I      intronic chr1:224562210(+) A-I      intronic chr1:224562246(+) A-I      intronic chr1:224561451(+) A-I      intronic chr1:224561475(+) A-I      intronic chr1:224548789(+) A-I      intronic chr1:224562256(+) A-I      intronic chr1:224557479(+) A-I      intronic chr1:224547747(+) A-I      intronic chr1:224562283(+) A-I      intronic chr1:224561482(+) A-I      intronic chr1:224547652(+) A-I      intronic chr1:224557203(+) A-I      intronic chr1:224562291(+) A-I      intronic chr1:224557119(+) A-I      intronic chr1:224560518(+) A-I      intronic chr1:224557110(+) A-I      intronic chr1:224561387(+) A-I      intronic chr1:224559550(+) A-I      intronic chr1:224560421(+) A-I      intronic chr1:224559524(+) A-I      intronic chr1:224562297(+) A-I      intronic chr1:224559515(+) A-I      intronic chr1:224559497(+) A-I      intronic chr1:224560544(+) A-I      intronic chr1:224547650(+) A-I      intronic chr1:224547715(+) A-I      intronic chr1:224555913(+) A-I      intronic chr1:224555792(+) A-I      intronic chr1:224547717(+) A-I      intronic chr1:224559420(+) A-I      intronic chr1:224559576(+) A-I      intronic chr1:224547678(+) A-I      intronic chr1:224549827(+) A-I      intronic chr1:224549555(+) A-I      intronic chr1:224549887(+) A-I      intronic chr1:224547750(+) A-I      intronic chr1:224559523(+) A-I      intronic chr1:224549924(+) A-I      intronic chr1:224552449(+) A-I      intronic chr1:224549522(+) A-I      intronic chr1:224549991(+) A-I      intronic chr1:224551840(+) A-I      intronic chr1:224547763(+) A-I      intronic chr1:224549476(+) A-I      intronic chr1:224562186(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CNIH4	chr1:224544733-224544734(+) m6A exon//intron       24981863 chr1:224563584-224563585(+) m6A 3'UTR//exon//intron       24981863//27773535 chr1:224563605-224563606(+) m6A 3'UTR//exon//intron       24981863//27773535 chr1:224563640-224563641(+) m6A 3'UTR//exon//intron       24981863//27773535 chr1:224563647-224563648(+) m6A 3'UTR//exon//intron       24981863//27773535 chr1:224563688-224563689(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:224563798-224563799(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr1:224563803-224563804(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr1:224563840-224563841(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr1:224563858-224563859(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr1:224563917-224563918(+) m6A 3'UTR//exon//intron       24284625//24981863//22608085 chr1:224563935-224563936(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:224564008-224564009(+) m6A 3'UTR//exon//intron       24981863//22608085 chr1:224564092-224564093(+) m6A 3'UTR//exon//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CNIH4	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-2-5p
Interactor2: CNIH4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg