Basic Information:

  VIRBase ID:  

VHID00437863

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-2-5p:  MIMAT0002183          SMG7:  NM_001331007     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-2-5p	SMG7
miRBase Accession/Entrez ID	MIMAT0002183	9887
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf16//EST1C//SGA56M

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SMG7	chr1:183483045(+) A-I      intronic chr1:183483038(+) A-I      intronic chr1:183483034(+) A-I      intronic chr1:183483018(+) A-I      intronic chr1:183483015(+) A-I      intronic chr1:183483050(+) A-I      intronic chr1:183483014(+) A-I      intronic chr1:183483013(+) A-I      intronic chr1:183482989(+) A-I      intronic chr1:183482988(+) A-I      intronic chr1:183462331(+) A-I      intronic chr1:183462319(+) A-I      intronic chr1:183462299(+) A-I      intronic chr1:183480203(+) A-I      intronic chr1:183455863(+) A-I      intronic chr1:183455729(+) A-I      intronic chr1:183477380(+) A-I      intronic chr1:183443536(+) A-I      intronic chr1:183450985(+) A-I      intronic chr1:183477442(+) A-I      intronic chr1:183490921(+) A-I      intronic chr1:183455610(+) A-I      intronic chr1:183488315(+) A-I      intronic chr1:183477469(+) A-I      intronic chr1:183443522(+) A-I      intronic chr1:183462330(+) A-I      intronic chr1:183490854(+) A-I      intronic chr1:183462221(+) A-I      intronic chr1:183477472(+) A-I      intronic chr1:183455933(+) A-I      intronic chr1:183460038(+) A-I      intronic chr1:183455632(+) A-I      intronic chr1:183443539(+) A-I      intronic chr1:183455685(+) A-I      intronic chr1:183488149(+) A-I      intronic chr1:183488234(+) A-I      intronic chr1:183460024(+) A-I      intronic chr1:183460020(+) A-I      intronic chr1:183451066(+) A-I      intronic chr1:183443496(+) A-I      intronic chr1:183490853(+) A-I      intronic chr1:183488307(+) A-I      intronic chr1:183488243(+) A-I      intronic chr1:183477360(+) A-I      intronic chr1:183488248(+) A-I      intronic chr1:183455590(+) A-I      intronic chr1:183467411(+) A-I      intronic chr1:183466871(+) A-I      intronic chr1:183466841(+) A-I      intronic chr1:183466834(+) A-I      intronic chr1:183466822(+) A-I      intronic chr1:183455625(+) A-I      intronic chr1:183462379(+) A-I      intronic chr1:183462372(+) A-I      intronic chr1:183462362(+) A-I      intronic chr1:183488274(+) A-I      intronic chr1:183483054(+) A-I      intronic chr1:183467533(+) A-I      intronic chr1:183464904(+) A-I      intronic chr1:183464852(+) A-I      intronic chr1:183462197(+) A-I      intronic chr1:183487195(+) A-I      intronic chr1:183482555(+) A-I      intronic chr1:183482983(+) A-I      intronic chr1:183464742(+) A-I      intronic chr1:183490777(+) A-I      intronic chr1:183443465(+) A-I      intronic chr1:183492045(+) A-I      intronic chr1:183490835(+) A-I      intronic chr1:183464910(+) A-I      intronic chr1:183466870(+) A-I      intronic chr1:183443579(+) A-I      intronic chr1:183464856(+) A-I      intronic chr1:183482633(+) A-I      intronic chr1:183490334(+) A-I      intronic chr1:183464851(+) A-I      intronic chr1:183462307(+) A-I      intronic chr1:183483122(+) A-I      intronic chr1:183464883(+) A-I      intronic chr1:183467463(+) A-I      intronic chr1:183492090(+) A-I      intronic chr1:183467487(+) A-I      intronic chr1:183490898(+) A-I      intronic chr1:183466979(+) A-I      intronic chr1:183466967(+) A-I      intronic chr1:183477423(+) A-I      intronic chr1:183482636(+) A-I      intronic chr1:183492087(+) A-I      intronic chr1:183483085(+) A-I      intronic chr1:183491979(+) A-I      intronic chr1:183462781(+) A-I      intronic chr1:183488207(+) A-I      intronic chr1:183482766(+) A-I      intronic chr1:183464882(+) A-I      intronic chr1:183490814(+) A-I      intronic chr1:183490894(+) A-I      intronic chr1:183495384(+) A-I      intronic chr1:183480177(+) A-I      intronic chr1:183482707(+) A-I      intronic chr1:183490815(+) A-I      intronic chr1:183467513(+) A-I      intronic chr1:183490363(+) A-I      intronic chr1:183490916(+) A-I      intronic chr1:183462424(+) A-I      intronic chr1:183487162(+) A-I      intronic chr1:183467597(+) A-I      intronic chr1:183464750(+) A-I      intronic chr1:183443731(+) A-I      intronic chr1:183491001(+) A-I      intronic chr1:183467565(+) A-I      intronic chr1:183490417(+) A-I      intronic chr1:183490760(+) A-I      intronic chr1:183482956(+) A-I      intronic chr1:183491989(+) A-I      intronic chr1:183483080(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SMG7	chr1:183443579(+) A-G intron -    22484847 chr1:183462781(+) A-G intron -    22484847 chr1:183464856(+) A-G intron -    22484847 chr1:183464882(+) A-G intron -    22484847 chr1:183464883(+) A-G intron -    22484847 chr1:183464904(+) A-G intron -    22484847 chr1:183464910(+) A-G intron -    22484847 chr1:183466870(+) A-G intron -    22484847 chr1:183466967(+) A-G intron -    22484847 chr1:183466979(+) A-G intron -    22484847 chr1:183467513(+) A-G intron -    22484847 chr1:183467533(+) A-G intron -    22484847 chr1:183467597(+) A-G intron -    22484847 chr1:183473563(+) T-C intron -    22484847 chr1:183477423(+) A-G intron -    22484847 chr1:183482555(+) A-G intron -    22484847 chr1:183482707(+) A-G intron -    22484847 chr1:183490334(+) A-G intron -    22484847 chr1:183490343(+) T-C intron -    22484847 chr1:183490363(+) A-G intron -    22484847 chr1:183491979(+) A-G intron -    22484847 chr1:183491989(+) A-G intron -    22484847 chr1:183492045(+) A-G intron -    22484847 chr1:183493475(+) T-C intron -    22484847 chr1:183495384(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SMG7	chr1:183441711-183441712(+) m6A 5'UTR//exon       24981863 chr1:183507563-183507564(+) m6A CDS       - chr1:183510120-183510121(+) m6A CDS       - chr1:183510159-183510160(+) m6A CDS       - chr1:183511443-183511444(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:183511451-183511452(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:183511464-183511465(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:183511470-183511471(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:183511509-183511510(+) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:183511554-183511555(+) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:183511571-183511572(+) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:183511577-183511578(+) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:183511610-183511611(+) m6A CDS//intron       24284625//24981863//22608085 chr1:183513499-183513500(+) m6A CDS       24284625//24981863//22608085 chr1:183513504-183513505(+) m6A CDS       24284625//24981863//22608085 chr1:183513514-183513515(+) m6A CDS       24284625//24981863//22608085 chr1:183513538-183513539(+) m6A CDS       24284625//24981863//22608085 chr1:183513553-183513554(+) m6A CDS       24284625//24981863//22608085 chr1:183514156-183514157(+) m6A CDS       24284625 chr1:183514193-183514194(+) m6A CDS       24284625 chr1:183514212-183514213(+) m6A CDS       24284625//24981863 chr1:183514251-183514252(+) m6A CDS       24284625//24981863 chr1:183514265-183514266(+) m6A CDS       24284625//24981863 chr1:183514272-183514273(+) m6A CDS       24284625//24981863 chr1:183515123-183515124(+) m6A CDS       24284625 chr1:183515180-183515181(+) m6A CDS       24284625//24981863//22608085 chr1:183515199-183515200(+) m6A CDS       24284625//24981863//26404942//22608085 chr1:183515206-183515207(+) m6A CDS       24284625//24981863//26404942//22608085 chr1:183515216-183515217(+) m6A CDS       24284625//24981863//26404942//22608085 chr1:183518969-183518970(+) m6A CDS//exon       24284625 chr1:183518997-183518998(+) m6A CDS//exon       24284625 chr1:183519024-183519025(+) m6A CDS//exon       24284625 chr1:183519083-183519084(+) m6A exon//intron       24284625//24981863 chr1:183520984-183520985(+) m6A CDS//intron       24284625 chr1:183521026-183521027(+) m6A CDS//intron       24284625//25456834//24981863 chr1:183521038-183521039(+) m6A CDS//intron       24284625//25456834//24981863 chr1:183521052-183521053(+) m6A CDS//intron       24284625//25456834//24981863//26404942//22608085 chr1:183521102-183521103(+) m6A 3'UTR//intron       24284625//25456834//24981863//26404942//22608085 chr1:183521126-183521127(+) m6A 3'UTR//intron       24284625//25456834//24981863//26404942//22575960//22608085 chr1:183521261-183521262(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr1:183521304-183521305(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr1:183521427-183521428(+) m6A 3'UTR//intron       22608085 chr1:183522149-183522150(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:183522264-183522265(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//22608085 chr1:183522291-183522292(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr1:183522336-183522337(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:183522370-183522371(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:183522393-183522394(+) m6A 3'UTR//intron       24284625//24209618//24981863//27773535//22608085 chr1:183522401-183522402(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942//27773535//22608085 chr1:183522459-183522460(+) m6A 3'UTR//intron       24981863//26404942//22608085 chr1:183522612-183522613(+) m6A 3'UTR//intron       - chr1:183522628-183522629(+) m6A 3'UTR//intron       - chr1:183522857-183522858(+) m6A 3'UTR//intron       24284625 chr1:183522992-183522993(+) m6A 3'UTR//intron       24284625 chr1:183523017-183523018(+) m6A 3'UTR//intron       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SMG7	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-2-5p
Interactor2: SMG7

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg