Detail Information

Basic Information:


  VIRBase ID:  

VHID00436186

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-5p:           ZNF785:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-1-5p ZNF785
miRBase
Accession/Entrez ID		 MIMAT0002182 146540
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - ZNF688

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF785
chr16:30592653(-) A-I      3'UTR
chr16:30593279(-) A-I      3'UTR
chr16:30593202(-) A-I      3'UTR
chr16:30592681(-) A-I      3'UTR
chr16:30592663(-) A-I      3'UTR
chr16:30592056(-) A-I      3'UTR
chr16:30592055(-) A-I      3'UTR
chr16:30592657(-) A-I      3'UTR
chr16:30592637(-) A-I      3'UTR
chr16:30592632(-) A-I      3'UTR
chr16:30592050(-) A-I      3'UTR
chr16:30592630(-) A-I      3'UTR
chr16:30592614(-) A-I      3'UTR
chr16:30593404(-) A-I      3'UTR
chr16:30592502(-) A-I      3'UTR
chr16:30592016(-) A-I      3'UTR
chr16:30593324(-) A-I      3'UTR
chr16:30593283(-) A-I      3'UTR
chr16:30593259(-) A-I      3'UTR
chr16:30591999(-) A-I      3'UTR
chr16:30593244(-) A-I      3'UTR
chr16:30593227(-) A-I      3'UTR
chr16:30593215(-) A-I      3'UTR
chr16:30593183(-) A-I      3'UTR
chr16:30592446(-) A-I      3'UTR
chr16:30592423(-) A-I      3'UTR
chr16:30592398(-) A-I      3'UTR
chr16:30593164(-) A-I      3'UTR
chr16:30593149(-) A-I      3'UTR
chr16:30592361(-) A-I      3'UTR
chr16:30592777(-) A-I      3'UTR
chr16:30592325(-) A-I      3'UTR
chr16:30592309(-) A-I      3'UTR
chr16:30592775(-) A-I      3'UTR
chr16:30592297(-) A-I      3'UTR
chr16:30592263(-) A-I      3'UTR
chr16:30592245(-) A-I      3'UTR
chr16:30592734(-) A-I      3'UTR
chr16:30592724(-) A-I      3'UTR
chr16:30592719(-) A-I      3'UTR
chr16:30592244(-) A-I      3'UTR
chr16:30592036(-) A-I      3'UTR
chr16:30592096(-) A-I      3'UTR
chr16:30592095(-) A-I      3'UTR
chr16:30591840(-) A-I      intronic
chr16:30591243(-) A-I      intronic
chr16:30591409(-) A-I      intronic
chr16:30592718(-) A-I      3'UTR
chr16:30592599(-) A-I      3'UTR
chr16:30592617(-) A-I      3'UTR
chr16:30592357(-) A-I      3'UTR
chr16:30592536(-) A-I      3'UTR
chr16:30593152(-) A-I      3'UTR
chr16:30592524(-) A-I      3'UTR
chr16:30591993(-) A-I      3'UTR
chr16:30592373(-) A-I      3'UTR
chr16:30592669(-) A-I      3'UTR
chr16:30592049(-) A-I      3'UTR
chr16:30592454(-) A-I      3'UTR
chr16:30592559(-) A-I      3'UTR
chr16:30593323(-) A-I      3'UTR
chr16:30593349(-) A-I      3'UTR
chr16:30592285(-) A-I      3'UTR
chr16:30591605(-) A-I      intronic
chr16:30591617(-) A-I      intronic
chr16:30591539(-) A-I      intronic
chr16:30591544(-) A-I      intronic
chr16:30591601(-) A-I      intronic
chr16:30592385(-) A-I      3'UTR
chr16:30593241(-) A-I      3'UTR
chr16:30592591(-) A-I      3'UTR
chr16:30593295(-) A-I      3'UTR
chr16:30593394(-) A-I      3'UTR
chr16:30592697(-) A-I      3'UTR
chr16:30592079(-) A-I      3'UTR
chr16:30592322(-) A-I      3'UTR
chr16:30593224(-) A-I      3'UTR
chr16:30592306(-) A-I      3'UTR
chr16:30592762(-) A-I      3'UTR
chr16:30592402(-) A-I      3'UTR
chr16:30593285(-) A-I      3'UTR
chr16:30592316(-) A-I      3'UTR
chr16:30592694(-) A-I      3'UTR
chr16:30592403(-) A-I      3'UTR
chr16:30593307(-) A-I      3'UTR
chr16:30592118(-) A-I      3'UTR
chr16:30592659(-) A-I      3'UTR
chr16:30592656(-) A-I      3'UTR
chr16:30593258(-) A-I      3'UTR
chr16:30593165(-) A-I      3'UTR
chr16:30592087(-) A-I      3'UTR
chr16:30592537(-) A-I      3'UTR
chr16:30592712(-) A-I      3'UTR
chr16:30592272(-) A-I      3'UTR
chr16:30592353(-) A-I      3'UTR
chr16:30593343(-) A-I      3'UTR
chr16:30592041(-) A-I      3'UTR
chr16:30592538(-) A-I      3'UTR
chr16:30593263(-) A-I      3'UTR
chr16:30592363(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF785
chr16:30592041(-) A-I exon 3'UTR    15342557
chr16:30592049(-) A-I exon 3'UTR    15342557
chr16:30592079(-) A-I exon 3'UTR    15342557
chr16:30592087(-) A-I exon 3'UTR    15342557
chr16:30592272(-) A-I exon 3'UTR    15342557
chr16:30592285(-) A-I exon 3'UTR    15342557
chr16:30592306(-) A-I exon 3'UTR    15342557
chr16:30592316(-) A-I exon 3'UTR    15342557
chr16:30592322(-) A-I exon 3'UTR    15342557
chr16:30592353(-) A-I exon 3'UTR    15342557
chr16:30592357(-) A-I exon 3'UTR    15342557
chr16:30592363(-) A-I exon 3'UTR    15342557
chr16:30592373(-) A-I exon 3'UTR    15342557
chr16:30592402(-) A-I exon 3'UTR    15342557
chr16:30592403(-) A-I exon 3'UTR    15342557
chr16:30592409(-) A-I exon 3'UTR    15342557
chr16:30592524(-) A-I exon 3'UTR    15342557
chr16:30592538(-) A-I exon 3'UTR    15342557
chr16:30592591(-) A-I exon 3'UTR    15342557
chr16:30592599(-) A-I exon 3'UTR    15342557
chr16:30592656(-) A-I exon 3'UTR    15342557
chr16:30592659(-) A-I exon 3'UTR    15342557
chr16:30592669(-) A-I exon 3'UTR    15342557   //22327324
chr16:30592697(-) A-I exon 3'UTR    15342557   //22327324
chr16:30592712(-) A-I exon 3'UTR    15342557
chr16:30592718(-) A-I exon 3'UTR    15342557
chr16:30592762(-) A-I exon 3'UTR    15342557
chr16:30593224(-) A-I exon 3'UTR    15342557
chr16:30593263(-) A-I exon 3'UTR    15342557
chr16:30593343(-) A-I exon 3'UTR    15342557
chr16:30593349(-) A-I exon 3'UTR    15342557
chr16:30592322(-) A-G exon 3'UTR    21725310
chr16:30593164(-) A-G exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF785
chr16:30589870-30589871(-) m6A 3'UTR//intron       -
chr16:30590704-30590705(-) m6A 3'UTR//intron       -
chr16:30590716-30590717(-) m6A 3'UTR//intron       25456834
chr16:30590722-30590723(-) m6A 3'UTR//intron       25456834
chr16:30590735-30590736(-) m6A 3'UTR//intron       25456834
chr16:30590795-30590796(-) m6A 3'UTR//intron       25456834
chr16:30591004-30591005(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:30591046-30591047(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:30591082-30591083(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:30591105-30591106(-) m6A 3'UTR//intron       24209618//25456834//24981863//27773535
chr16:30591123-30591124(-) m6A 3'UTR       24209618//25456834//24981863//27773535
chr16:30591139-30591140(-) m6A 3'UTR       24209618//25456834//24981863//27773535
chr16:30592015-30592016(-) m6A 3'UTR//intron       25456834//27773535
chr16:30592943-30592944(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:30592951-30592952(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:30592960-30592961(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:30592968-30592969(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:30593002-30593003(-) m6A 3'UTR//intron       25456834//24981863//27773535
chr16:30593022-30593023(-) m6A 3'UTR//intron       25456834//24981863
chr16:30593045-30593046(-) m6A 3'UTR//intron       25456834
chr16:30593079-30593080(-) m6A 3'UTR//intron       -
chr16:30593094-30593095(-) m6A 3'UTR//intron       -
chr16:30593783-30593784(-) m6A 3'UTR//intron       -
chr16:30593865-30593866(-) m6A 3'UTR       -
chr16:30594041-30594042(-) m6A CDS       22608085
chr16:30594319-30594320(-) m6A CDS       24981863
chr16:30594571-30594572(-) m6A 3'UTR//CDS       24209618//25456834//24981863//27371828//22575960
chr16:30594591-30594592(-) m6A 3'UTR//CDS       24209618//25456834//24981863//27371828//22575960
chr16:30594607-30594608(-) m6A 3'UTR//CDS       24209618//25456834//24981863//27371828//22575960
chr16:30594714-30594715(-) m6A 3'UTR//CDS       25456834//24981863//27371828
chr16:30596452-30596453(-) m6A 3'UTR//CDS//intron       25456834//27773535//27371828
chr16:30596554-30596555(-) m6A CDS       22608085
chr16:30596702-30596703(-) m6A CDS//intron       22608085
chr16:30596751-30596752(-) m6A CDS       22608085
chr16:30596997-30596998(-) m6A 5'UTR       25456834//27371828
chr16:30597013-30597014(-) m6A 5'UTR       25456834//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZNF785
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-1-5p
Interactor2: ZNF785

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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