Table S10A Genes that contribute to the enrichments of PAR-CLIP targets of miR-K1 from BC-1 libraries in downregulated mRNAs in BJAB/miR-K1 cells.Table S10D Genes that contribute to the enrichments of PAR-CLIP targets of miR-K1 from BC-3 libraries in downregulated mRNAs in BJAB/miR-K1 cells.
As KSHV putative direct targets we extracted transcripts that were significantly down-regulated significantly in the replicate experiments, and which contained at least one seed-match to one of the KSHV miRNAs. We identified 704 putative direct targets in DG-75 cells (Figure 3B), and 980 putative direct targets in EA.hy926 cells (Figure 3C). A complete list of putative direct targets can be found in Dataset S2 for DG-75 cells and in Dataset S3 for EA.hy926 cells. The overlap between the two datasets contained 153 putative direct targets (Dataset S4).
