Detail Information

Basic Information:


  VIRBase ID:  

VHID00433722

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-5p:           LRPPRC:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-1-5p LRPPRC
miRBase
Accession/Entrez ID		 MIMAT0002182 10128
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - CLONE-23970//GP130//LRP130//LSFC//MC4DN5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LRPPRC
chr2:44170826(-) A-I      NonSyn:Lys->Arg
chr2:44170827(-) A-I      NonSyn:Lys->Glu
chr2:44126465(-) A-I      NonSyn:Met->Val
chr2:44216074(-) A-I      intronic
chr2:44147547(-) A-I      intronic
chr2:44147516(-) A-I      intronic
chr2:44170032(-) A-I      intronic
chr2:44170823(-) A-I      intronic
chr2:44147565(-) A-I      intronic
chr2:44196969(-) A-I      intronic
chr2:44147520(-) A-I      intronic
chr2:44123474(-) A-I      intronic
chr2:44131210(-) A-I      intronic
chr2:44131360(-) A-I      intronic
chr2:44131376(-) A-I      intronic
chr2:44131602(-) A-I      intronic
chr2:44131750(-) A-I      intronic
chr2:44131830(-) A-I      intronic
chr2:44142113(-) A-I      intronic
chr2:44142129(-) A-I      intronic
chr2:44142261(-) A-I      intronic
chr2:44142651(-) A-I      intronic
chr2:44142741(-) A-I      intronic
chr2:44142933(-) A-I      intronic
chr2:44143171(-) A-I      intronic
chr2:44143852(-) A-I      intronic
chr2:44143890(-) A-I      intronic
chr2:44143954(-) A-I      intronic
chr2:44143984(-) A-I      intronic
chr2:44144081(-) A-I      intronic
chr2:44144285(-) A-I      intronic
chr2:44144336(-) A-I      intronic
chr2:44144374(-) A-I      intronic
chr2:44144732(-) A-I      intronic
chr2:44144772(-) A-I      intronic
chr2:44144804(-) A-I      intronic
chr2:44147353(-) A-I      intronic
chr2:44147386(-) A-I      intronic
chr2:44147454(-) A-I      intronic
chr2:44147554(-) A-I      intronic
chr2:44148172(-) A-I      intronic
chr2:44148201(-) A-I      intronic
chr2:44148319(-) A-I      intronic
chr2:44148348(-) A-I      intronic
chr2:44192305(-) A-I      intronic
chr2:44192418(-) A-I      intronic
chr2:44193658(-) A-I      intronic
chr2:44193716(-) A-I      intronic
chr2:44193820(-) A-I      intronic
chr2:44194081(-) A-I      intronic
chr2:44194128(-) A-I      intronic
chr2:44196982(-) A-I      intronic
chr2:44196983(-) A-I      intronic
chr2:44196990(-) A-I      intronic
chr2:44196991(-) A-I      intronic
chr2:44196997(-) A-I      intronic
chr2:44197011(-) A-I      intronic
chr2:44197081(-) A-I      intronic
chr2:44207488(-) A-I      intronic
chr2:44207490(-) A-I      intronic
chr2:44207521(-) A-I      intronic
chr2:44208696(-) A-I      intronic
chr2:44208714(-) A-I      intronic
chr2:44209143(-) A-I      intronic
chr2:44209224(-) A-I      intronic
chr2:44209229(-) A-I      intronic
chr2:44209240(-) A-I      intronic
chr2:44213520(-) A-I      intronic
chr2:44213541(-) A-I      intronic
chr2:44214486(-) A-I      intronic
chr2:44214515(-) A-I      intronic
chr2:44214522(-) A-I      intronic
chr2:44215432(-) A-I      intronic
chr2:44215433(-) A-I      intronic
chr2:44215459(-) A-I      intronic
chr2:44215513(-) A-I      intronic
chr2:44215575(-) A-I      intronic
chr2:44216101(-) A-I      intronic
chr2:44216152(-) A-I      intronic
chr2:44216158(-) A-I      intronic
chr2:44218365(-) A-I      intronic
chr2:44218408(-) A-I      intronic
chr2:44222121(-) A-I      intronic
chr2:44222293(-) A-I      intronic
chr2:44222317(-) A-I      intronic
chr2:44222328(-) A-I      intronic
chr2:44222162(-) A-I      intronic
chr2:44208752(-) A-I      intronic
chr2:44196867(-) A-I      intronic
chr2:44193776(-) A-I      intronic
chr2:44144282(-) A-I      intronic
chr2:44143085(-) A-I      intronic
chr2:44192137(-) A-I      intronic
chr2:44123359(-) A-I      intronic
chr2:44209185(-) A-I      intronic
chr2:44208710(-) A-I      intronic
chr2:44143015(-) A-I      intronic
chr2:44192147(-) A-I      intronic
chr2:44117730(-) A-I      intronic
chr2:44194104(-) A-I      intronic
chr2:44192073(-) A-I      intronic
chr2:44218307(-) A-I      intronic
chr2:44147412(-) A-I      intronic
chr2:44143093(-) A-I      intronic
chr2:44215911(-) A-I      intronic
chr2:44192152(-) A-I      intronic
chr2:44213462(-) A-I      intronic
chr2:44194066(-) A-I      intronic
chr2:44142675(-) A-I      intronic
chr2:44216254(-) A-I      intronic
chr2:44147346(-) A-I      intronic
chr2:44144308(-) A-I      intronic
chr2:44207548(-) A-I      intronic
chr2:44222258(-) A-I      intronic
chr2:44197094(-) A-I      intronic
chr2:44153644(-) A-I      intronic
chr2:44144406(-) A-I      intronic
chr2:44147494(-) A-I      intronic
chr2:44216243(-) A-I      intronic
chr2:44131369(-) A-I      intronic
chr2:44144876(-) A-I      intronic
chr2:44155889(-) A-I      intronic
chr2:44193713(-) A-I      intronic
chr2:44143002(-) A-I      intronic
chr2:44192471(-) A-I      intronic
chr2:44131749(-) A-I      intronic
chr2:44144344(-) A-I      intronic
chr2:44144373(-) A-I      intronic
chr2:44222280(-) A-I      intronic
chr2:44116212(-) A-I      intronic
chr2:44207610(-) A-I      intronic
chr2:44215842(-) A-I      intronic
chr2:44217195(-) A-I      intronic
chr2:44123489(-) A-I      intronic
chr2:44153635(-) A-I      intronic
chr2:44142723(-) A-I      intronic
chr2:44144211(-) A-I      intronic
chr2:44216270(-) A-I      intronic
chr2:44215887(-) A-I      intronic
chr2:44144353(-) A-I      intronic
chr2:44213365(-) A-I      intronic
chr2:44222217(-) A-I      intronic
chr2:44222214(-) A-I      intronic
chr2:44142103(-) A-I      intronic
chr2:44209273(-) A-I      intronic
chr2:44131796(-) A-I      intronic
chr2:44144326(-) A-I      intronic
chr2:44197061(-) A-I      intronic
chr2:44144359(-) A-I      intronic
chr2:44209211(-) A-I      intronic
chr2:44208618(-) A-I      intronic
chr2:44208713(-) A-I      intronic
chr2:44149709(-) A-I      intronic
chr2:44213448(-) A-I      intronic
chr2:44209289(-) A-I      intronic
chr2:44148174(-) A-I      intronic
chr2:44213393(-) A-I      intronic
chr2:44193688(-) A-I      intronic
chr2:44144077(-) A-I      intronic
chr2:44143170(-) A-I      intronic
chr2:44209243(-) A-I      intronic
chr2:44144739(-) A-I      intronic
chr2:44196978(-) A-I      intronic
chr2:44215132(-) A-I      intronic
chr2:44197088(-) A-I      intronic
chr2:44123483(-) A-I      intronic
chr2:44131179(-) A-I      intronic
chr2:44194050(-) A-I      intronic
chr2:44131226(-) A-I      intronic
chr2:44144383(-) A-I      intronic
chr2:44218297(-) A-I      intronic
chr2:44144038(-) A-I      intronic
chr2:44116190(-) A-I      intronic
chr2:44147439(-) A-I      intronic
chr2:44218301(-) A-I      intronic
chr2:44144467(-) A-I      intronic
chr2:44215431(-) A-I      intronic
chr2:44207606(-) A-I      intronic
chr2:44142740(-) A-I      intronic
chr2:44218450(-) A-I      intronic
chr2:44215948(-) A-I      intronic
chr2:44207576(-) A-I      intronic
chr2:44209279(-) A-I      intronic
chr2:44208654(-) A-I      intronic
chr2:44143080(-) A-I      intronic
chr2:44207609(-) A-I      intronic
chr2:44208650(-) A-I      intronic
chr2:44144735(-) A-I      intronic
chr2:44131220(-) A-I      intronic
chr2:44193781(-) A-I      intronic
chr2:44144411(-) A-I      intronic
chr2:44142657(-) A-I      intronic
chr2:44142813(-) A-I      intronic
chr2:44150600(-) A-I      intronic
chr2:44144936(-) A-I      intronic
chr2:44193718(-) A-I      intronic
chr2:44144761(-) A-I      intronic
chr2:44143155(-) A-I      intronic
chr2:44222268(-) A-I      intronic
chr2:44193717(-) A-I      intronic
chr2:44144666(-) A-I      intronic
chr2:44209241(-) A-I      intronic
chr2:44193752(-) A-I      intronic
chr2:44197087(-) A-I      intronic
chr2:44217275(-) A-I      intronic
chr2:44194127(-) A-I      intronic
chr2:44216258(-) A-I      intronic
chr2:44131818(-) A-I      intronic
chr2:44142816(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LRPPRC
chr2:44131179(-) A-G intron -    22484847
chr2:44131220(-) A-G intron -    22484847
chr2:44131226(-) A-G intron -    22484847
chr2:44131233(-) A-G intron -    22484847
chr2:44131369(-) A-G intron -    22484847
chr2:44131749(-) A-G intron -    22484847
chr2:44142675(-) A-G intron -    22484847
chr2:44142723(-) A-G intron -    22484847
chr2:44142740(-) A-G intron -    22484847
chr2:44142816(-) A-G intron -    22484847
chr2:44143078(-) A-G intron -    22484847
chr2:44143080(-) A-G intron -    22484847
chr2:44143081(-) A-G intron -    22484847
chr2:44143085(-) A-G intron -    22484847
chr2:44143093(-) A-G intron -    22484847
chr2:44143170(-) A-G intron -    22484847
chr2:44143199(-) A-G intron -    22484847
chr2:44144038(-) A-G intron -    22484847
chr2:44144344(-) A-G intron -    22484847
chr2:44144359(-) A-G intron -    22484847
chr2:44144383(-) A-G intron -    22484847
chr2:44144384(-) A-G intron -    22484847
chr2:44144406(-) A-G intron -    22484847
chr2:44144467(-) A-G intron -    22484847
chr2:44144666(-) A-G intron -    22484847
chr2:44144735(-) A-G intron -    22484847
chr2:44144739(-) A-G intron -    22484847
chr2:44144816(-) A-G intron -    22484847
chr2:44144876(-) A-G intron -    22484847
chr2:44144887(-) A-G intron -    22484847
chr2:44144936(-) A-G intron -    22484847
chr2:44144939(-) A-G intron -    22484847
chr2:44147403(-) A-G intron -    22484847
chr2:44147412(-) A-G intron -    22484847
chr2:44147556(-) A-G intron -    22484847
chr2:44148283(-) A-G intron -    22484847
chr2:44153610(-) T-C intron -    22484847
chr2:44153803(-) T-C intron -    22484847
chr2:44178043(-) G-A intron -    22484847
chr2:44190553(-) A-T intron -    22484847
chr2:44192471(-) A-G intron -    22484847
chr2:44193688(-) A-G intron -    22484847
chr2:44193713(-) A-G intron -    22484847
chr2:44193718(-) A-G intron -    22484847
chr2:44193776(-) A-G intron -    22484847
chr2:44193781(-) A-G intron -    22484847
chr2:44194035(-) A-G intron -    22484847
chr2:44194050(-) A-G intron -    22484847
chr2:44194066(-) A-G intron -    22484847
chr2:44194104(-) A-G intron -    22484847
chr2:44196867(-) A-G intron -    22484847
chr2:44196987(-) A-G intron -    22484847
chr2:44197088(-) A-G intron -    22484847
chr2:44197094(-) A-G intron -    22484847
chr2:44207548(-) A-G intron -    22484847
chr2:44207576(-) A-G intron -    22484847
chr2:44207606(-) A-G intron -    22484847
chr2:44207609(-) A-G intron -    22484847
chr2:44207610(-) A-G intron -    22484847
chr2:44207710(-) C-T intron -    22484847
chr2:44207713(-) C-T intron -    22484847
chr2:44207714(-) T-C intron -    22484847
chr2:44208618(-) A-G intron -    22484847
chr2:44208710(-) A-G intron -    22484847
chr2:44208713(-) A-G intron -    22484847
chr2:44208733(-) A-G intron -    22484847
chr2:44208752(-) A-G intron -    22484847
chr2:44209185(-) A-G intron -    22484847
chr2:44209211(-) A-G intron -    22484847
chr2:44209241(-) A-G intron -    22484847
chr2:44209243(-) A-G intron -    22484847
chr2:44209273(-) A-G intron -    22484847
chr2:44209274(-) A-G intron -    22484847
chr2:44213384(-) A-G intron -    22484847
chr2:44213393(-) A-G intron -    22484847
chr2:44213406(-) A-G intron -    22484847
chr2:44213407(-) A-G intron -    22484847
chr2:44213448(-) A-G intron -    22484847
chr2:44213462(-) A-G intron -    22484847
chr2:44214430(-) A-G intron -    22484847
chr2:44214445(-) A-G intron -    22484847
chr2:44215586(-) T-C intron -    22484847
chr2:44215599(-) A-G intron -    22484847
chr2:44215842(-) A-G intron -    22484847
chr2:44215911(-) A-G intron -    22484847
chr2:44216239(-) A-G intron -    22484847
chr2:44216243(-) A-G intron -    22484847
chr2:44216258(-) A-G intron -    22484847
chr2:44216270(-) A-G intron -    22484847
chr2:44217275(-) A-G intron -    22484847
chr2:44218450(-) A-G intron -    22484847
chr2:44222183(-) A-G intron -    22484847
chr2:44222214(-) A-G intron -    22484847
chr2:44222217(-) A-G intron -    22484847
chr2:44222268(-) A-G intron -    22484847
chr2:44222271(-) A-G intron -    22484847
chr2:44222280(-) A-G intron -    22484847
chr2:44222297(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LRPPRC
chr2:44114449-44114450(-) Y 3'UTR       26075521
chr2:44126426-44126427(-) m6A CDS//exon       26404942
chr2:44126620-44126621(-) m6A CDS//exon       26404942
chr2:44126677-44126678(-) m6A CDS//exon       26404942
chr2:44126717-44126718(-) m6A CDS//exon       26404942
chr2:44145251-44145252(-) m6A CDS       26404942
chr2:44145459-44145460(-) m6A CDS       26404942
chr2:44174466-44174467(-) m6A CDS       26404942
chr2:44174879-44174880(-) m6A CDS       26404942
chr2:44175577-44175578(-) m6A CDS//exon       26404942
chr2:44176747-44176748(-) m6A CDS//exon       26404942
chr2:44190748-44190749(-) m6A CDS//exon       26404942
chr2:44190788-44190789(-) m6A CDS//exon       26404942
chr2:44200936-44200937(-) m6A CDS       26404942
chr2:44201019-44201020(-) m6A CDS       26404942
chr2:44202290-44202291(-) m6A CDS       22575960
chr2:44202335-44202336(-) m6A CDS       22575960
chr2:44204309-44204310(-) m6A CDS       26404942//22575960
chr2:44216523-44216524(-) Gm intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LRPPRC
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-1-5p
Interactor2: LRPPRC

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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