Basic Information:

  VIRBase ID:  

VHID00432970

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-5p:  MIMAT0002182          SDC4:  NM_002999     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-1-5p	SDC4
miRBase Accession/Entrez ID	MIMAT0002182	6385
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SYND4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SDC4	chr20:43963399(-) A-I      intronic chr20:43963373(-) A-I      intronic chr20:43962209(-) A-I      intronic chr20:43963394(-) A-I      intronic chr20:43963377(-) A-I      intronic chr20:43962865(-) A-I      intronic chr20:43962187(-) A-I      intronic chr20:43962161(-) A-I      intronic chr20:43962201(-) A-I      intronic chr20:43963391(-) A-I      intronic chr20:43962160(-) A-I      intronic chr20:43962866(-) A-I      intronic chr20:43962727(-) A-I      intronic chr20:43962087(-) A-I      intronic chr20:43962909(-) A-I      intronic chr20:43962883(-) A-I      intronic chr20:43963994(-) A-I      intronic chr20:43962916(-) A-I      intronic chr20:43962910(-) A-I      intronic chr20:43962695(-) A-I      intronic chr20:43962814(-) A-I      intronic chr20:43956318(-) A-I      intronic chr20:43962097(-) A-I      intronic chr20:43962200(-) A-I      intronic chr20:43963257(-) A-I      intronic chr20:43962829(-) A-I      intronic chr20:43963915(-) A-I      intronic chr20:43962197(-) A-I      intronic chr20:43956523(-) A-I      intronic chr20:43963985(-) A-I      intronic chr20:43962126(-) A-I      intronic chr20:43964002(-) A-I      intronic chr20:43962707(-) A-I      intronic chr20:43962063(-) A-I      intronic chr20:43962731(-) A-I      intronic chr20:43965022(-) A-I      intronic chr20:43962052(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SDC4	chr20:43953943-43953944(-) m6A 3'UTR       27773535 chr20:43954132-43954133(-) m6A 3'UTR       27773535 chr20:43954960-43954961(-) m6A 3'UTR       24981863 chr20:43955451-43955452(-) m6A 3'UTR       24284625 chr20:43955457-43955458(-) m6A 3'UTR       24284625 chr20:43955636-43955637(-) m6A 3'UTR       24284625//24209618//24981863//27773535 chr20:43955659-43955660(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535 chr20:43955756-43955757(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr20:43955837-43955838(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:43955877-43955878(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:43955945-43955946(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr20:43959135-43959136(-) m6A CDS       24284625 chr20:43959144-43959145(-) m6A CDS       24284625 chr20:43961696-43961697(-) m6A CDS       24284625 chr20:43964528-43964529(-) m6A CDS       24284625//25456834//24981863//27371828 chr20:43964550-43964551(-) m6A CDS       24284625//25456834//24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SDC4	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-1-5p
Interactor2: SDC4

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg