Basic Information:

  VIRBase ID:  

VHID00432354

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-5p:  MIMAT0002182          GRIK2:  NM_001166247     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-1-5p	GRIK2
miRBase Accession/Entrez ID	MIMAT0002182	2898
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EAA4//GLR6//GluK2//GLUK6//GLUR6//MRT6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GRIK2	chr6:102073144(+) A-I      intronic chr6:101942592(+) A-I      intronic chr6:102073133(+) A-I      intronic chr6:102073127(+) A-I      intronic chr6:102169175(+) A-I      intronic chr6:101943261(+) A-I      intronic chr6:101931698(+) A-I      intronic chr6:101956913(+) A-I      intronic chr6:102192091(+) A-I      intronic chr6:102210103(+) A-I      intronic chr6:102282783(+) A-I      intronic chr6:102139808(+) A-I      intronic chr6:102205840(+) A-I      intronic chr6:102411302(+) A-I      intronic chr6:101956777(+) A-I      intronic chr6:101942670(+) A-I      intronic chr6:102169205(+) A-I      intronic chr6:101956854(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GRIK2	chr6:102337689(+) A-I exon CDS    21984433 chr6:102337702(+) A-I exon CDS    21984433 chr6:102372592(+) A-I exon CDS    21984433

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GRIK2	chr6:101846981-101846982(+) m6A 5'UTR       22575960 chr6:101847017-101847018(+) m6A 5'UTR       22575960 chr6:101847092-101847093(+) m6A 5'UTR       22575960 chr6:102516317-102516318(+) m6A 3'UTR//CDS       24981863 chr6:102516374-102516375(+) m6A 3'UTR//CDS       24284625//24981863 chr6:102516400-102516401(+) m6A 3'UTR       24284625//24981863 chr6:102516414-102516415(+) m6A 3'UTR       24284625//24981863 chr6:102516432-102516433(+) m6A 3'UTR       24284625//24981863 chr6:102516514-102516515(+) m6A 3'UTR       24284625//24981863 chr6:102516521-102516522(+) m6A 3'UTR       24284625//24981863 chr6:102516552-102516553(+) m6A 3'UTR       24284625//24981863 chr6:102517410-102517411(+) m6A 3'UTR       24981863 chr6:102517441-102517442(+) m6A 3'UTR       24981863 chr6:102517453-102517454(+) m6A 3'UTR       24981863 chr6:102517488-102517489(+) m6A 3'UTR       24981863 chr6:102517501-102517502(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GRIK2	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-1-5p
Interactor2: GRIK2

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg