Detail Information

Basic Information:


  VIRBase ID:  

VHID00431911

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-1-5p:           AHR:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-1-5p AHR
miRBase
Accession/Entrez ID		 MIMAT0002182 196
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - bHLHe76//RP85

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR AHR
chr7:17384944(+) A-I      3'UTR
chr7:17384943(+) A-I      3'UTR
chr7:17384942(+) A-I      3'UTR
chr7:17384897(+) A-I      3'UTR
chr7:17384859(+) A-I      3'UTR
chr7:17384841(+) A-I      3'UTR
chr7:17384500(+) A-I      3'UTR
chr7:17384835(+) A-I      3'UTR
chr7:17384824(+) A-I      3'UTR
chr7:17384789(+) A-I      3'UTR
chr7:17384788(+) A-I      3'UTR
chr7:17384762(+) A-I      3'UTR
chr7:17384755(+) A-I      3'UTR
chr7:17384749(+) A-I      3'UTR
chr7:17384732(+) A-I      3'UTR
chr7:17384729(+) A-I      3'UTR
chr7:17384702(+) A-I      3'UTR
chr7:17384524(+) A-I      3'UTR
chr7:17384513(+) A-I      3'UTR
chr7:17384473(+) A-I      3'UTR
chr7:17384450(+) A-I      3'UTR
chr7:17384415(+) A-I      3'UTR
chr7:17384406(+) A-I      3'UTR
chr7:17384399(+) A-I      3'UTR
chr7:17384333(+) A-I      3'UTR
chr7:17384317(+) A-I      3'UTR
chr7:17384315(+) A-I      3'UTR
chr7:17384304(+) A-I      3'UTR
chr7:17384299(+) A-I      3'UTR
chr7:17384285(+) A-I      3'UTR
chr7:17384279(+) A-I      3'UTR
chr7:17384277(+) A-I      3'UTR
chr7:17384275(+) A-I      3'UTR
chr7:17384273(+) A-I      3'UTR
chr7:17384915(+) A-I      3'UTR
chr7:17384902(+) A-I      3'UTR
chr7:17384850(+) A-I      3'UTR
chr7:17384409(+) A-I      3'UTR
chr7:17384441(+) A-I      3'UTR
chr7:17384354(+) A-I      3'UTR
chr7:17384777(+) A-I      3'UTR
chr7:17384818(+) A-I      3'UTR
chr7:17384886(+) A-I      3'UTR
chr7:17384926(+) A-I      3'UTR
chr7:17384420(+) A-I      3'UTR
chr7:17384437(+) A-I      3'UTR
chr7:17384778(+) A-I      3'UTR
chr7:17384774(+) A-I      3'UTR
chr7:17384474(+) A-I      3'UTR
chr7:17384724(+) A-I      3'UTR
chr7:17384677(+) A-I      3'UTR
chr7:17384880(+) A-I      3'UTR
chr7:17384941(+) A-I      3'UTR
chr7:17384811(+) A-I      3'UTR
chr7:17384853(+) A-I      3'UTR
chr7:17384889(+) A-I      3'UTR
chr7:17384462(+) A-I      3'UTR
chr7:17384529(+) A-I      3'UTR
chr7:17384792(+) A-I      3'UTR
chr7:17384393(+) A-I      3'UTR
chr7:17384527(+) A-I      3'UTR
chr7:17384851(+) A-I      3'UTR
chr7:17384845(+) A-I      3'UTR
chr7:17384940(+) A-I      3'UTR
chr7:17384781(+) A-I      3'UTR
chr7:17384371(+) A-I      3'UTR
chr7:17384395(+) A-I      3'UTR
chr7:17384740(+) A-I      3'UTR
chr7:17384380(+) A-I      3'UTR
chr7:17384515(+) A-I      3'UTR
chr7:17384334(+) A-I      3'UTR
chr7:17384685(+) A-I      3'UTR
chr7:17384358(+) A-I      3'UTR
chr7:17384882(+) A-I      3'UTR
chr7:17384694(+) A-I      3'UTR
chr7:17384440(+) A-I      3'UTR
chr7:17384298(+) A-I      3'UTR
chr7:17384482(+) A-I      3'UTR
chr7:17384780(+) A-I      3'UTR
chr7:17384730(+) A-I      3'UTR
chr7:17384738(+) A-I      3'UTR
chr7:17384434(+) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED AHR
chr7:17384298(+) A-I exon 3'UTR    15342557
chr7:17384318(+) A-I exon 3'UTR    15342557
chr7:17384334(+) A-I exon 3'UTR    15342557
chr7:17384353(+) A-I exon 3'UTR    15342557   //21960545   //22327324
chr7:17384354(+) A-I exon 3'UTR    15342557   //22327324
chr7:17384358(+) A-I exon 3'UTR    15342557   //15258596
chr7:17384371(+) A-I exon 3'UTR    15342557
chr7:17384380(+) A-I exon 3'UTR    15342557
chr7:17384393(+) A-I exon 3'UTR    15258596
chr7:17384395(+) A-I exon 3'UTR    15258596   //21960545
chr7:17384434(+) A-I exon 3'UTR    15342557
chr7:17384437(+) A-I exon 3'UTR    15342557
chr7:17384440(+) A-I exon 3'UTR    15342557
chr7:17384462(+) A-I exon 3'UTR    15342557
chr7:17384482(+) A-I exon 3'UTR    15342557
chr7:17384514(+) A-I exon 3'UTR    15342557   //22327324
chr7:17384515(+) A-I exon 3'UTR    15342557
chr7:17384527(+) A-I exon 3'UTR    15342557
chr7:17384669(+) A-I exon 3'UTR    15342557
chr7:17384730(+) A-I exon 3'UTR    15342557   //22028664   //22327324
chr7:17384763(+) A-I exon 3'UTR    15342557
chr7:17384774(+) A-I exon 3'UTR    15342557   //22028664   //22327324
chr7:17384777(+) A-I exon 3'UTR    15342557   //22028664   //22327324
chr7:17384778(+) A-I exon 3'UTR    15342557   //22028664   //22327324
chr7:17384779(+) A-I exon 3'UTR    15342557   //22327324
chr7:17384780(+) A-I exon 3'UTR    15342557
chr7:17384783(+) A-I exon 3'UTR    15342557   //22028664
chr7:17384785(+) A-I exon 3'UTR    15342557
chr7:17384792(+) A-I exon 3'UTR    15342557   //22028664   //22327324
chr7:17384818(+) A-I exon 3'UTR    15342557   //22028664   //21960545   //22327324
chr7:17384832(+) A-I exon 3'UTR    15342557   //22028664   //21960545
chr7:17384880(+) A-I exon 3'UTR    15342557   //22028664
chr7:17384882(+) A-I exon 3'UTR    15342557
chr7:17384887(+) A-I exon 3'UTR    15342557   //22028664   //21960545   //22327324
chr7:17384940(+) A-I exon 3'UTR    15342557
chr7:17384845(+) A-I intron -    22028664
chr7:17384860(+) A-I intron -    22028664
chr7:17350176(+) G-T intron -    22484847
chr7:17350232(+) C-T intron -    22484847
chr7:17384272(+) G-T intron -    22484847
chr7:17384334(+) A-G intron -    22484847
chr7:17384353(+) A-G intron -    22484847
chr7:17384354(+) A-G intron -    22484847
chr7:17384358(+) A-G intron -    22484847
chr7:17384371(+) A-G intron -    22484847
chr7:17384393(+) A-G intron -    22484847
chr7:17384395(+) A-G intron -    22484847
chr7:17384428(+) A-G intron -    22484847
chr7:17384437(+) A-G intron -    22484847
chr7:17384440(+) A-G intron -    22484847
chr7:17384441(+) A-G intron -    22484847
chr7:17384453(+) A-G intron -    22484847
chr7:17384504(+) T-C intron -    22484847
chr7:17384514(+) A-G intron -    22484847
chr7:17384515(+) A-G intron -    22484847
chr7:17384527(+) A-G intron -    22484847
chr7:17384669(+) A-G intron -    22484847
chr7:17384677(+) A-G intron -    22484847
chr7:17384685(+) A-G intron -    22484847
chr7:17384686(+) A-G intron -    22484847
chr7:17384691(+) A-G intron -    22484847
chr7:17384694(+) A-G intron -    22484847
chr7:17384730(+) A-G intron -    22484847
chr7:17384763(+) A-G intron -    22484847
chr7:17384774(+) A-G intron -    22484847
chr7:17384777(+) A-G intron -    22484847
chr7:17384778(+) A-G intron -    22484847
chr7:17384779(+) A-G intron -    22484847
chr7:17384780(+) A-G intron -    22484847
chr7:17384781(+) A-G intron -    22484847
chr7:17384783(+) A-G intron -    22484847
chr7:17384792(+) A-G intron -    22484847
chr7:17384811(+) A-G intron -    22484847
chr7:17384818(+) A-G intron -    22484847
chr7:17384828(+) A-G intron -    22484847
chr7:17384832(+) A-G intron -    22484847
chr7:17384860(+) A-G intron -    22484847
chr7:17384880(+) A-G intron -    22484847
chr7:17384882(+) A-G intron -    22484847
chr7:17384887(+) A-G intron -    22484847
chr7:17384889(+) A-G intron -    22484847
chr7:17384926(+) A-G intron -    22484847
chr7:17384941(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase AHR
chr7:17338323-17338324(+) m6A 5'UTR       24284625//25456834//24981863//22608085
chr7:17338337-17338338(+) m6A 5'UTR       24284625//25456834//24981863//22575960//22608085
chr7:17338381-17338382(+) m6A 5'UTR       24284625//25456834//24981863//22575960//22608085
chr7:17338790-17338791(+) m6A 5'UTR       24284625
chr7:17338839-17338840(+) m6A 5'UTR       24284625
chr7:17338892-17338893(+) m6A CDS       24284625
chr7:17349615-17349616(+) m6A CDS       26404942
chr7:17349636-17349637(+) m6A CDS       26404942
chr7:17349687-17349688(+) m6A CDS       26404942
chr7:17373573-17373574(+) m6A CDS//exon       27773535
chr7:17373673-17373674(+) m6A CDS       27773535
chr7:17375409-17375410(+) Cm CDS//exon       -
chr7:17378622-17378623(+) m6A CDS//exon       24284625//24981863
chr7:17378739-17378740(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr7:17378764-17378765(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr7:17378794-17378795(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr7:17378896-17378897(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085
chr7:17378978-17378979(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr7:17379010-17379011(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr7:17379055-17379056(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr7:17379082-17379083(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr7:17379103-17379104(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr7:17379110-17379111(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085
chr7:17379169-17379170(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379271-17379272(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379293-17379294(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379308-17379309(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379412-17379413(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379451-17379452(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379478-17379479(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379544-17379545(+) m6A CDS       24284625//24981863//26404942//27773535//22575960//22608085
chr7:17379601-17379602(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379623-17379624(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379688-17379689(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17379735-17379736(+) m6A CDS       24284625//24981863//26404942//22608085
chr7:17379779-17379780(+) m6A CDS       24284625//24981863//27773535//22608085
chr7:17379847-17379848(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17382568-17382569(+) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr7:17382607-17382608(+) m6A CDS       24284625//24981863//27773535//22608085
chr7:17382651-17382652(+) m6A CDS       24284625//24981863//27773535//22608085
chr7:17382755-17382756(+) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085
chr7:17382823-17382824(+) m6A 3'UTR       24284625//24981863//22608085
chr7:17384110-17384111(+) m6A 3'UTR//intron       27773535
chr7:17384137-17384138(+) m6A 3'UTR//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate AHR
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Colon cancer cells     24393600
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-1-5p
Interactor2: AHR

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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