Detail Information

Basic Information:


  VIRBase ID:  

VHID00431057

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-11-3p:           C1orf198:      

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Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-11-3p C1orf198
miRBase
Accession/Entrez ID		 MIMAT0002181 84886
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C1orf198
chr1:230982903(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C1orf198
chr1:230973048-230973049(-) m6A 3'UTR       24284625
chr1:230973226-230973227(-) m6A 3'UTR       24284625//27773535
chr1:230973275-230973276(-) m6A 3'UTR       27773535
chr1:230974241-230974242(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr1:230974301-230974302(-) Y 3'UTR       26075521
chr1:230974516-230974517(-) m6A 3'UTR       24284625
chr1:230974561-230974562(-) m6A 3'UTR       24284625
chr1:230974634-230974635(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr1:230974693-230974694(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085
chr1:230974784-230974785(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr1:230975007-230975008(-) m6A 3'UTR       24284625//25456834
chr1:230975121-230975122(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960
chr1:230975328-230975329(-) m6A 3'UTR       24284625//27773535
chr1:230975425-230975426(-) m6A 3'UTR       27773535
chr1:230975570-230975571(-) m6A 3'UTR       24284625//24981863
chr1:230975607-230975608(-) m6A CDS       24284625//24981863
chr1:230979114-230979115(-) m6A CDS       24284625//24981863//27371828
chr1:230979130-230979131(-) m6A CDS       24284625//24981863//27371828//22608085
chr1:230979234-230979235(-) m6A CDS       24284625//25456834//27371828//27773536//22608085
chr1:230979316-230979317(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr1:230979330-230979331(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr1:230979567-230979568(-) m6A 5'UTR//CDS       24284625//27773535//27773536
chr1:230991418-230991419(-) m6A 5'UTR//CDS//exon//intron       24284625//27773535//27773536
chr1:230991488-230991489(-) m6A exon//intron       24284625//27773536
chr1:230991857-230991858(-) m6A exon//intron       27773536
chr1:231003998-231003999(-) m6A CDS//intron       27773536
chr1:231004007-231004008(-) m6A CDS//intron       27773536
chr1:231004121-231004122(-) m6A CDS//intron       24284625//27773536
chr1:231004202-231004203(-) m6A CDS//exon//intron       24284625//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate C1orf198
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-11-3p
Interactor2: C1orf198

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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