Basic Information:

  VIRBase ID:  

VHID00429831

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-11-3p:  MIMAT0002181          ZC3H13:  NR_167893     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-11-3p	ZC3H13
miRBase Accession/Entrez ID	MIMAT0002181	23091
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	KIAA0853//Xio

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZC3H13	chr13:46568767(-) A-I      intronic chr13:46568741(-) A-I      intronic chr13:46567426(-) A-I      intronic chr13:46568754(-) A-I      intronic chr13:46568774(-) A-I      intronic chr13:46568775(-) A-I      intronic chr13:46568777(-) A-I      intronic chr13:46568778(-) A-I      intronic chr13:46567384(-) A-I      intronic chr13:46567407(-) A-I      intronic chr13:46567433(-) A-I      intronic chr13:46567437(-) A-I      intronic chr13:46613074(-) A-I      intronic chr13:46567416(-) A-I      intronic chr13:46610994(-) A-I      intronic chr13:46613155(-) A-I      intronic chr13:46612987(-) A-I      intronic chr13:46610200(-) A-I      intronic chr13:46611029(-) A-I      intronic chr13:46610226(-) A-I      intronic chr13:46610956(-) A-I      intronic chr13:46611033(-) A-I      intronic chr13:46611091(-) A-I      intronic chr13:46613094(-) A-I      intronic chr13:46610875(-) A-I      intronic chr13:46599604(-) A-I      intronic chr13:46579654(-) A-I      intronic chr13:46599474(-) A-I      intronic chr13:46610172(-) A-I      intronic chr13:46611126(-) A-I      intronic chr13:46599533(-) A-I      intronic chr13:46610196(-) A-I      intronic chr13:46610197(-) A-I      intronic chr13:46599520(-) A-I      intronic chr13:46567432(-) A-I      intronic chr13:46610214(-) A-I      intronic chr13:46567397(-) A-I      intronic chr13:46613033(-) A-I      intronic chr13:46599594(-) A-I      intronic chr13:46579789(-) A-I      intronic chr13:46610199(-) A-I      intronic chr13:46599578(-) A-I      intronic chr13:46613202(-) A-I      intronic chr13:46613081(-) A-I      intronic chr13:46599510(-) A-I      intronic chr13:46579800(-) A-I      intronic chr13:46568748(-) A-I      intronic chr13:46567423(-) A-I      intronic chr13:46573361(-) A-I      intronic chr13:46579801(-) A-I      intronic chr13:46612245(-) A-I      intronic chr13:46580147(-) A-I      intronic chr13:46568745(-) A-I      intronic chr13:46567431(-) A-I      intronic chr13:46580106(-) A-I      intronic chr13:46579803(-) A-I      intronic chr13:46612976(-) A-I      intronic chr13:46580206(-) A-I      intronic chr13:46565047(-) A-I      intronic chr13:46579765(-) A-I      intronic chr13:46613063(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZC3H13	chr13:46529871-46529872(-) m6A 3'UTR       27773535 chr13:46529886-46529887(-) m6A 3'UTR       27773535 chr13:46529975-46529976(-) m6A 3'UTR       27773535 chr13:46530134-46530135(-) m6A 3'UTR       24981863//27773535//22608085 chr13:46530160-46530161(-) m6A 3'UTR       24981863//27773535//22608085 chr13:46530183-46530184(-) m6A 3'UTR       24981863//27773535//22608085 chr13:46530253-46530254(-) m6A 3'UTR       24981863//27773535//22608085 chr13:46530278-46530279(-) m6A 3'UTR       27773535 chr13:46530824-46530825(-) m6A 3'UTR       24284625//27773535//22608085 chr13:46530877-46530878(-) m6A 3'UTR       27773535//22608085 chr13:46530897-46530898(-) m6A 3'UTR       27773535//22608085 chr13:46530930-46530931(-) m6A 3'UTR       27773535//22608085 chr13:46530994-46530995(-) m6A 3'UTR       27773535//22608085 chr13:46531034-46531035(-) m6A 3'UTR       27773535//22608085 chr13:46531110-46531111(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr13:46531259-46531260(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr13:46531276-46531277(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr13:46531303-46531304(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr13:46531317-46531318(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr13:46531327-46531328(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr13:46531347-46531348(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr13:46531391-46531392(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr13:46531420-46531421(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr13:46533761-46533762(-) m6A CDS       27773535 chr13:46533774-46533775(-) m6A CDS       27773535 chr13:46538118-46538119(-) m6A CDS       27773535 chr13:46539440-46539441(-) m6A CDS       24209618//24981863//27773535 chr13:46539481-46539482(-) m6A CDS       24209618//24981863//27773535 chr13:46541653-46541654(-) m6A CDS       24209618//24981863//27773535//27371828 chr13:46541671-46541672(-) m6A CDS       24209618//24981863//27773535//27371828 chr13:46541736-46541737(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr13:46541768-46541769(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541780-46541781(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541827-46541828(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541832-46541833(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541838-46541839(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541844-46541845(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541850-46541851(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541876-46541877(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541898-46541899(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541910-46541911(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46541988-46541989(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr13:46542041-46542042(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr13:46542069-46542070(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr13:46542128-46542129(-) m1A CDS       26863196 chr13:46542904-46542905(-) m6A CDS       24209618//24981863//27773535 chr13:46542966-46542967(-) m6A CDS       24981863//27773535 chr13:46543191-46543192(-) m6A CDS       24284625//24981863//27773535 chr13:46543214-46543215(-) m6A CDS       24284625//24981863//27773535 chr13:46543514-46543515(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22608085 chr13:46543581-46543582(-) m6A CDS       24284625//24981863//28052920//27773535//22608085 chr13:46543687-46543688(-) m6A CDS       24284625//24981863//28052920//27773535//22608085 chr13:46543728-46543729(-) m6A CDS       24284625//24981863//28052920//27773535//22608085 chr13:46543783-46543784(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46543811-46543812(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46543836-46543837(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46543847-46543848(-) Am CDS       - chr13:46543861-46543862(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46543871-46543872(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46543912-46543913(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46543921-46543922(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46543951-46543952(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46543957-46543958(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46543993-46543994(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr13:46544027-46544028(-) m6A CDS       24284625//24981863//27773535//27371828 chr13:46544092-46544093(-) m6A CDS       24284625//24981863//27773535//27371828 chr13:46544098-46544099(-) m6A CDS       24284625//24981863//27773535//27371828 chr13:46544528-46544529(-) m6A CDS       24284625//24209618//24981863//27773535//27371828 chr13:46544539-46544540(-) m6A CDS       24284625//24209618//24981863//27773535//27371828 chr13:46544563-46544564(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr13:46549437-46549438(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr13:46549469-46549470(-) Gm CDS       - chr13:46549504-46549505(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr13:46549510-46549511(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr13:46549654-46549655(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr13:46549690-46549691(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr13:46549696-46549697(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr13:46549767-46549768(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr13:46549828-46549829(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr13:46549888-46549889(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085 chr13:46549965-46549966(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536 chr13:46553970-46553971(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536 chr13:46553984-46553985(-) m6A CDS       24284625//24981863//27773535//27371828//27773536 chr13:46554024-46554025(-) m6A CDS       24981863//27773535//27371828//27773536 chr13:46554067-46554068(-) m6A CDS       24981863//27773535//27371828//27773536 chr13:46559556-46559557(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr13:46559625-46559626(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr13:46559718-46559719(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46559727-46559728(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46559736-46559737(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46559744-46559745(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46559754-46559755(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46559784-46559785(-) Gm CDS       - chr13:46559798-46559799(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46559817-46559818(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr13:46559840-46559841(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr13:46559865-46559866(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr13:46559877-46559878(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr13:46562960-46562961(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22608085 chr13:46562976-46562977(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22608085 chr13:46563006-46563007(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22608085 chr13:46563092-46563093(-) m6A CDS       24284625//24981863//27773535//22608085 chr13:46563116-46563117(-) m6A CDS       24284625//24981863//27773535//22608085 chr13:46563144-46563145(-) m6A CDS       24284625//24981863//27773535//22608085 chr13:46563186-46563187(-) m6A CDS       24284625//24981863//27773535//22608085 chr13:46563213-46563214(-) m6A CDS       24284625//25456834//24981863//27773535//22608085 chr13:46575326-46575327(-) m6A exon//intron       24284625//25456834//24981863//27773535//22608085 chr13:46575493-46575494(-) m6A exon//intron       27773535//22608085 chr13:46575506-46575507(-) m6A exon//intron       27773535//22608085 chr13:46575586-46575587(-) m6A exon//intron       24284625//24981863//27773535//22608085 chr13:46577282-46577283(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr13:46577321-46577322(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr13:46577337-46577338(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr13:46577354-46577355(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr13:46577437-46577438(-) m6A CDS//exon       24284625//24981863//27773535//22608085 chr13:46577460-46577461(-) m6A CDS//exon       24981863//27773535//22608085 chr13:46584305-46584306(-) m6A 3'UTR//intron       24981863//27773535 chr13:46584313-46584314(-) m6A 3'UTR//intron       27773535 chr13:46584326-46584327(-) m6A 3'UTR//intron       27773535 chr13:46585586-46585587(-) m6A CDS//exon       24981863//27773535//22608085 chr13:46585594-46585595(-) m6A CDS//exon       24981863//27773535//22608085 chr13:46594595-46594596(-) m6A CDS       24981863//27773535//22608085 chr13:46594631-46594632(-) m6A CDS       24981863//27773535//22608085 chr13:46594654-46594655(-) m6A CDS       24981863//27773535//22608085 chr13:46594671-46594672(-) m6A CDS       24981863//27773535//22608085 chr13:46616347-46616348(-) m6A CDS       24981863//27773535 chr13:46616365-46616366(-) m6A CDS       24981863//27773535 chr13:46616397-46616398(-) m6A CDS       24981863//27773535 chr13:46619152-46619153(-) m6A CDS       24981863//27773535 chr13:46619174-46619175(-) m6A CDS       24981863//27773535 chr13:46619549-46619550(-) m6A CDS       24981863//27773535 chr13:46619573-46619574(-) m6A CDS       24981863//27773535 chr13:46619599-46619600(-) m6A CDS       24284625//24981863//27773535 chr13:46626878-46626879(-) m6A 5'UTR       24981863 chr13:46626887-46626888(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZC3H13	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-11-3p
Interactor2: ZC3H13

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg