Detail Information

Basic Information:


  VIRBase ID:  

VHID00429754

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-11-3p:           RNF24:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-11-3p RNF24
miRBase
Accession/Entrez ID		 MIMAT0002181 11237
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - G1L

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RNF24
chr20:3944008(-) A-I      intronic
chr20:3944004(-) A-I      intronic
chr20:3942927(-) A-I      intronic
chr20:3942881(-) A-I      intronic
chr20:3978103(-) A-I      intronic
chr20:3984564(-) A-I      intronic
chr20:3944015(-) A-I      intronic
chr20:3990684(-) A-I      intronic
chr20:3990963(-) A-I      intronic
chr20:3990973(-) A-I      intronic
chr20:3944018(-) A-I      intronic
chr20:3978142(-) A-I      intronic
chr20:3944041(-) A-I      intronic
chr20:3923559(-) A-I      intronic
chr20:3941831(-) A-I      intronic
chr20:3941832(-) A-I      intronic
chr20:3942022(-) A-I      intronic
chr20:3944017(-) A-I      intronic
chr20:3944007(-) A-I      intronic
chr20:3944019(-) A-I      intronic
chr20:3990984(-) A-I      intronic
chr20:3944013(-) A-I      intronic
chr20:3991006(-) A-I      intronic
chr20:3991018(-) A-I      intronic
chr20:3978131(-) A-I      intronic
chr20:3942006(-) A-I      intronic
chr20:3987006(-) A-I      intronic
chr20:3986888(-) A-I      intronic
chr20:3984549(-) A-I      intronic
chr20:3984422(-) A-I      intronic
chr20:3984398(-) A-I      intronic
chr20:3984395(-) A-I      intronic
chr20:3983755(-) A-I      intronic
chr20:3923244(-) A-I      intronic
chr20:3923326(-) A-I      intronic
chr20:3923601(-) A-I      intronic
chr20:3923623(-) A-I      intronic
chr20:3923667(-) A-I      intronic
chr20:3923325(-) A-I      intronic
chr20:3923676(-) A-I      intronic
chr20:3930295(-) A-I      intronic
chr20:3931788(-) A-I      intronic
chr20:3933927(-) A-I      intronic
chr20:3933931(-) A-I      intronic
chr20:3933937(-) A-I      intronic
chr20:3935295(-) A-I      intronic
chr20:3935398(-) A-I      intronic
chr20:3935544(-) A-I      intronic
chr20:3974072(-) A-I      intronic
chr20:3939456(-) A-I      intronic
chr20:3941149(-) A-I      intronic
chr20:3966558(-) A-I      intronic
chr20:3942908(-) A-I      intronic
chr20:3941167(-) A-I      intronic
chr20:3941253(-) A-I      intronic
chr20:3943541(-) A-I      intronic
chr20:3943549(-) A-I      intronic
chr20:3943580(-) A-I      intronic
chr20:3943936(-) A-I      intronic
chr20:3945330(-) A-I      intronic
chr20:3945338(-) A-I      intronic
chr20:3945456(-) A-I      intronic
chr20:3946657(-) A-I      intronic
chr20:3946659(-) A-I      intronic
chr20:3946736(-) A-I      intronic
chr20:3948528(-) A-I      intronic
chr20:3948594(-) A-I      intronic
chr20:3942944(-) A-I      intronic
chr20:3966011(-) A-I      intronic
chr20:3942894(-) A-I      intronic
chr20:3966003(-) A-I      intronic
chr20:3965982(-) A-I      intronic
chr20:3964643(-) A-I      intronic
chr20:3964408(-) A-I      intronic
chr20:3962317(-) A-I      intronic
chr20:3962274(-) A-I      intronic
chr20:3960194(-) A-I      intronic
chr20:3960190(-) A-I      intronic
chr20:3948803(-) A-I      intronic
chr20:3958950(-) A-I      intronic
chr20:3958918(-) A-I      intronic
chr20:3958904(-) A-I      intronic
chr20:3958390(-) A-I      intronic
chr20:3958388(-) A-I      intronic
chr20:3958331(-) A-I      intronic
chr20:3958323(-) A-I      intronic
chr20:3958291(-) A-I      intronic
chr20:3941672(-) A-I      intronic
chr20:3941786(-) A-I      intronic
chr20:3941803(-) A-I      intronic
chr20:3941845(-) A-I      intronic
chr20:3941855(-) A-I      intronic
chr20:3941905(-) A-I      intronic
chr20:3942038(-) A-I      intronic
chr20:3942782(-) A-I      intronic
chr20:3942817(-) A-I      intronic
chr20:3971407(-) A-I      intronic
chr20:3971401(-) A-I      intronic
chr20:3971400(-) A-I      intronic
chr20:3970051(-) A-I      intronic
chr20:3969167(-) A-I      intronic
chr20:3966561(-) A-I      intronic
chr20:3966560(-) A-I      intronic
chr20:3948830(-) A-I      intronic
chr20:3949143(-) A-I      intronic
chr20:3949153(-) A-I      intronic
chr20:3949263(-) A-I      intronic
chr20:3950556(-) A-I      intronic
chr20:3956629(-) A-I      intronic
chr20:3956729(-) A-I      intronic
chr20:3958268(-) A-I      intronic
chr20:3923217(-) A-I      intronic
chr20:3923149(-) A-I      intronic
chr20:3923066(-) A-I      intronic
chr20:3922863(-) A-I      intronic
chr20:3922851(-) A-I      intronic
chr20:3922639(-) A-I      intronic
chr20:3922638(-) A-I      intronic
chr20:3922635(-) A-I      intronic
chr20:3977623(-) A-I      intronic
chr20:3977749(-) A-I      intronic
chr20:3987014(-) A-I      intronic
chr20:3974109(-) A-I      intronic
chr20:3977773(-) A-I      intronic
chr20:3989332(-) A-I      intronic
chr20:3978152(-) A-I      intronic
chr20:3990641(-) A-I      intronic
chr20:3978220(-) A-I      intronic
chr20:3978249(-) A-I      intronic
chr20:3990777(-) A-I      intronic
chr20:3990778(-) A-I      intronic
chr20:3990863(-) A-I      intronic
chr20:3990960(-) A-I      intronic
chr20:3978324(-) A-I      intronic
chr20:3923301(-) A-I      intronic
chr20:3922558(-) A-I      intronic
chr20:3992866(-) A-I      intronic
chr20:3992877(-) A-I      intronic
chr20:3992940(-) A-I      intronic
chr20:3994267(-) A-I      intronic
chr20:3994293(-) A-I      intronic
chr20:3994300(-) A-I      intronic
chr20:3994303(-) A-I      intronic
chr20:3994336(-) A-I      intronic
chr20:3994356(-) A-I      intronic
chr20:3994357(-) A-I      intronic
chr20:3922533(-) A-I      intronic
chr20:3922538(-) A-I      intronic
chr20:3980185(-) A-I      intronic
chr20:3981742(-) A-I      intronic
chr20:3981766(-) A-I      intronic
chr20:3981806(-) A-I      intronic
chr20:3982911(-) A-I      intronic
chr20:3923300(-) A-I      intronic
chr20:3923297(-) A-I      intronic
chr20:3923295(-) A-I      intronic
chr20:3922504(-) A-I      intronic
chr20:3920730(-) A-I      intronic
chr20:3920708(-) A-I      intronic
chr20:3920691(-) A-I      intronic
chr20:3920668(-) A-I      intronic
chr20:3982921(-) A-I      intronic
chr20:3983684(-) A-I      intronic
chr20:3983702(-) A-I      intronic
chr20:3983723(-) A-I      intronic
chr20:3983754(-) A-I      intronic
chr20:3960045(-) A-I      intronic
chr20:3992936(-) A-I      intronic
chr20:3979603(-) A-I      intronic
chr20:3958867(-) A-I      intronic
chr20:3984494(-) A-I      intronic
chr20:3939453(-) A-I      intronic
chr20:3923591(-) A-I      intronic
chr20:3939417(-) A-I      intronic
chr20:3966523(-) A-I      intronic
chr20:3978238(-) A-I      intronic
chr20:3939400(-) A-I      intronic
chr20:3962281(-) A-I      intronic
chr20:3974071(-) A-I      intronic
chr20:3939477(-) A-I      intronic
chr20:3978134(-) A-I      intronic
chr20:3969223(-) A-I      intronic
chr20:3941611(-) A-I      intronic
chr20:3945438(-) A-I      intronic
chr20:3941937(-) A-I      intronic
chr20:3978106(-) A-I      intronic
chr20:3943612(-) A-I      intronic
chr20:3990598(-) A-I      intronic
chr20:3984454(-) A-I      intronic
chr20:3978322(-) A-I      intronic
chr20:3939427(-) A-I      intronic
chr20:3937628(-) A-I      intronic
chr20:3978315(-) A-I      intronic
chr20:3943425(-) A-I      intronic
chr20:3964703(-) A-I      intronic
chr20:3992894(-) A-I      intronic
chr20:3943887(-) A-I      intronic
chr20:3941268(-) A-I      intronic
chr20:3959605(-) A-I      intronic
chr20:3939426(-) A-I      intronic
chr20:3939413(-) A-I      intronic
chr20:3941875(-) A-I      intronic
chr20:3943882(-) A-I      intronic
chr20:3939452(-) A-I      intronic
chr20:3923549(-) A-I      intronic
chr20:3967328(-) A-I      intronic
chr20:3963112(-) A-I      intronic
chr20:3972019(-) A-I      intronic
chr20:3933861(-) A-I      intronic
chr20:3969355(-) A-I      intronic
chr20:3963368(-) A-I      intronic
chr20:3984387(-) A-I      intronic
chr20:3968964(-) A-I      intronic
chr20:3984533(-) A-I      intronic
chr20:3963489(-) A-I      intronic
chr20:3923627(-) A-I      intronic
chr20:3930013(-) A-I      intronic
chr20:3969378(-) A-I      intronic
chr20:3958465(-) A-I      intronic
chr20:3939482(-) A-I      intronic
chr20:3972172(-) A-I      intronic
chr20:3923392(-) A-I      intronic
chr20:3967324(-) A-I      intronic
chr20:3922883(-) A-I      intronic
chr20:3965960(-) A-I      intronic
chr20:3980318(-) A-I      intronic
chr20:3943434(-) A-I      intronic
chr20:3917649(-) A-I      intronic
chr20:3941719(-) A-I      intronic
chr20:3967106(-) A-I      intronic
chr20:3972171(-) A-I      intronic
chr20:3971275(-) A-I      intronic
chr20:3938053(-) A-I      intronic
chr20:3934607(-) A-I      intronic
chr20:3946643(-) A-I      intronic
chr20:3966524(-) A-I      intronic
chr20:3942963(-) A-I      intronic
chr20:3945440(-) A-I      intronic
chr20:3964883(-) A-I      intronic
chr20:3978266(-) A-I      intronic
chr20:3966655(-) A-I      intronic
chr20:3977678(-) A-I      intronic
chr20:3917664(-) A-I      intronic
chr20:3984484(-) A-I      intronic
chr20:3978146(-) A-I      intronic
chr20:3922465(-) A-I      intronic
chr20:3958256(-) A-I      intronic
chr20:3934240(-) A-I      intronic
chr20:3972038(-) A-I      intronic
chr20:3941972(-) A-I      intronic
chr20:3964695(-) A-I      intronic
chr20:3946633(-) A-I      intronic
chr20:3935382(-) A-I      intronic
chr20:3967170(-) A-I      intronic
chr20:3924741(-) A-I      intronic
chr20:3944022(-) A-I      intronic
chr20:3949257(-) A-I      intronic
chr20:3941619(-) A-I      intronic
chr20:3972145(-) A-I      intronic
chr20:3964671(-) A-I      intronic
chr20:3978202(-) A-I      intronic
chr20:3941979(-) A-I      intronic
chr20:3967679(-) A-I      intronic
chr20:3923529(-) A-I      intronic
chr20:3966448(-) A-I      intronic
chr20:3967302(-) A-I      intronic
chr20:3922674(-) A-I      intronic
chr20:3943585(-) A-I      intronic
chr20:3958955(-) A-I      intronic
chr20:3949213(-) A-I      intronic
chr20:3984495(-) A-I      intronic
chr20:3929864(-) A-I      intronic
chr20:3949053(-) A-I      intronic
chr20:3984548(-) A-I      intronic
chr20:3939449(-) A-I      intronic
chr20:3950600(-) A-I      intronic
chr20:3978248(-) A-I      intronic
chr20:3923082(-) A-I      intronic
chr20:3971473(-) A-I      intronic
chr20:3965986(-) A-I      intronic
chr20:3983781(-) A-I      intronic
chr20:3967055(-) A-I      intronic
chr20:3971966(-) A-I      intronic
chr20:3949149(-) A-I      intronic
chr20:3964860(-) A-I      intronic
chr20:3978225(-) A-I      intronic
chr20:3969305(-) A-I      intronic
chr20:3922634(-) A-I      intronic
chr20:3923584(-) A-I      intronic
chr20:3923153(-) A-I      intronic
chr20:3977609(-) A-I      intronic
chr20:3978346(-) A-I      intronic
chr20:3943512(-) A-I      intronic
chr20:3990660(-) A-I      intronic
chr20:3946656(-) A-I      intronic
chr20:3963484(-) A-I      intronic
chr20:3969247(-) A-I      intronic
chr20:3939570(-) A-I      intronic
chr20:3941113(-) A-I      intronic
chr20:3941605(-) A-I      intronic
chr20:3978289(-) A-I      intronic
chr20:3923666(-) A-I      intronic
chr20:3943485(-) A-I      intronic
chr20:3922675(-) A-I      intronic
chr20:3958933(-) A-I      intronic
chr20:3986789(-) A-I      intronic
chr20:3921865(-) A-I      intronic
chr20:3941876(-) A-I      intronic
chr20:3967362(-) A-I      intronic
chr20:3959496(-) A-I      intronic
chr20:3980365(-) A-I      intronic
chr20:3969204(-) A-I      intronic
chr20:3981663(-) A-I      intronic
chr20:3923565(-) A-I      intronic
chr20:3967115(-) A-I      intronic
chr20:3935379(-) A-I      intronic
chr20:3942891(-) A-I      intronic
chr20:3963195(-) A-I      intronic
chr20:3992942(-) A-I      intronic
chr20:3967329(-) A-I      intronic
chr20:3984458(-) A-I      intronic
chr20:3977790(-) A-I      intronic
chr20:3984528(-) A-I      intronic
chr20:3941239(-) A-I      intronic
chr20:3942042(-) A-I      intronic
chr20:3967019(-) A-I      intronic
chr20:3942831(-) A-I      intronic
chr20:3924708(-) A-I      intronic
chr20:3923631(-) A-I      intronic
chr20:3980357(-) A-I      intronic
chr20:3949224(-) A-I      intronic
chr20:3929776(-) A-I      intronic
chr20:3963435(-) A-I      intronic
chr20:3958396(-) A-I      intronic
chr20:3923579(-) A-I      intronic
chr20:3978272(-) A-I      intronic
chr20:3978339(-) A-I      intronic
chr20:3935470(-) A-I      intronic
chr20:3933835(-) A-I      intronic
chr20:3930279(-) A-I      intronic
chr20:3934108(-) A-I      intronic
chr20:3994404(-) A-I      intronic
chr20:3984382(-) A-I      intronic
chr20:3994240(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RNF24
chr20:3941072(-) A-I intron -    15258596
chr20:3941113(-) A-I intron -    15258596
chr20:3941152(-) A-I intron -    15258596
chr20:3984375(-) A-I intron -    15342557
chr20:3984382(-) A-I intron -    15342557
chr20:3984386(-) A-I intron -    15342557
chr20:3984387(-) A-I intron -    15342557
chr20:3984427(-) A-I intron -    15342557
chr20:3984428(-) A-I intron -    15342557
chr20:3984458(-) A-I intron -    15342557   //15258596
chr20:3984494(-) A-I intron -    15342557   //15258596
chr20:3984528(-) A-I intron -    15342557   //15258596
chr20:3984533(-) A-I intron -    15342557   //15258596
chr20:3984558(-) A-I intron -    15342557   //15258596
chr20:3984565(-) A-I intron -    15342557
chr20:3985695(-) A-I intron -    15342557
chr20:3931741(-) A-G intron -    22484847
chr20:3945440(-) A-G intron -    22484847
chr20:3950514(-) A-G intron -    22484847
chr20:3968964(-) A-G intron -    22484847
chr20:3981663(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RNF24
chr20:3908463-3908464(-) m6A 3'UTR       -
chr20:3908484-3908485(-) m6A 3'UTR       -
chr20:3908902-3908903(-) m6A 3'UTR       -
chr20:3909032-3909033(-) m6A 3'UTR       -
chr20:3909967-3909968(-) m6A 3'UTR       24284625//25456834//22608085
chr20:3910017-3910018(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr20:3910036-3910037(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr20:3910149-3910150(-) m6A 3'UTR       24284625//25456834//24981863//22608085
chr20:3910259-3910260(-) m6A 3'UTR       25456834//22608085
chr20:3910303-3910304(-) m6A 3'UTR       25456834
chr20:3912313-3912314(-) m6A 3'UTR       27773535
chr20:3912362-3912363(-) m6A 3'UTR       -
chr20:3912397-3912398(-) m6A 3'UTR       -
chr20:3912502-3912503(-) m6A 3'UTR       24981863
chr20:3912574-3912575(-) m6A 3'UTR       -
chr20:3912601-3912602(-) m6A 3'UTR       -
chr20:3914263-3914264(-) m6A 3'UTR       24284625//27773535//27371828
chr20:3914293-3914294(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828
chr20:3914377-3914378(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr20:3914462-3914463(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:3914558-3914559(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:3914565-3914566(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:3914582-3914583(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:3914615-3914616(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr20:3914652-3914653(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr20:3914680-3914681(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:3914691-3914692(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:3914719-3914720(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:3914751-3914752(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr20:3914758-3914759(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RNF24
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-11-3p
Interactor2: RNF24

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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