Detail Information

Basic Information:


  VIRBase ID:  

VHID00429656

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-11-3p:           SLU7:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-11-3p SLU7
miRBase
Accession/Entrez ID		 MIMAT0002181 10569
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - 9G8//hSlu7

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLU7
chr5:159843036(-) A-I      intronic
chr5:159842997(-) A-I      intronic
chr5:159829493(-) A-I      3'UTR
chr5:159843037(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLU7
chr5:159829421(-) T-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLU7
chr5:159828736-159828737(-) m6A 3'UTR       27773535
chr5:159828759-159828760(-) m6A 3'UTR       27773535
chr5:159830125-159830126(-) m6A 3'UTR       27773535
chr5:159830276-159830277(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr5:159830297-159830298(-) m6A CDS//exon       24981863//28052920//27773535//22608085
chr5:159830372-159830373(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22608085
chr5:159830380-159830381(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22608085
chr5:159830428-159830429(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22608085
chr5:159831548-159831549(-) m6A CDS//exon       24981863//28052920//27773535//27371828//22608085
chr5:159831826-159831827(-) m6A CDS       27773535
chr5:159831833-159831834(-) m6A CDS       27773535
chr5:159833456-159833457(-) m6A exon//intron       27773535
chr5:159833462-159833463(-) m6A exon//intron       27773535
chr5:159835671-159835672(-) m6A CDS       27773535
chr5:159835692-159835693(-) m6A CDS       27773535
chr5:159839463-159839464(-) m6A CDS       27773535
chr5:159839499-159839500(-) m6A CDS       27773535
chr5:159839516-159839517(-) m6A CDS       27773535
chr5:159840501-159840502(-) m6A CDS       27773535
chr5:159840573-159840574(-) m6A CDS       27773535
chr5:159840624-159840625(-) m6A CDS       27773535
chr5:159840877-159840878(-) m6A exon//intron       24981863//27773535
chr5:159840915-159840916(-) m6A CDS//exon       24981863//27773535
chr5:159841143-159841144(-) m6A exon//intron       27773535
chr5:159841221-159841222(-) m6A exon//intron       27773535
chr5:159841233-159841234(-) m6A exon//intron       27773535
chr5:159841276-159841277(-) m6A exon//intron       27773535
chr5:159841376-159841377(-) m6A CDS//exon       27773535
chr5:159841391-159841392(-) m6A CDS//exon       27773535
chr5:159841400-159841401(-) m6A CDS//exon       27773535
chr5:159841412-159841413(-) m6A CDS//exon       24981863//27773535
chr5:159841476-159841477(-) m6A CDS//exon       24209618//24981863//27773535
chr5:159842137-159842138(-) m1A CDS//exon       26863196
chr5:159842178-159842179(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr5:159842192-159842193(-) m1A CDS//exon       26863196//26863410
chr5:159842206-159842207(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr5:159842229-159842230(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr5:159844138-159844139(-) m6A 5'UTR//intron       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr5:159844149-159844150(-) m6A 5'UTR//intron       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr5:159844185-159844186(-) m6A 5'UTR//intron       24209618//25456834//24981863//27773535//27371828//22608085
chr5:159845609-159845610(-) m6A 5'UTR//exon//intron       24981863
chr5:159845818-159845819(-) m6A 5'UTR//intron       27773535
chr5:159845870-159845871(-) m6A 5'UTR//intron       27773535
chr5:159845892-159845893(-) m6A 5'UTR//intron       27773535
chr5:159845983-159845984(-) m6A 5'UTR//intron       24981863
chr5:159846009-159846010(-) m6A 5'UTR//intron       24981863
chr5:159846055-159846056(-) m6A 5'UTR//exon//intron       24981863
chr5:159846089-159846090(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLU7
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-11-3p
Interactor2: SLU7

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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