Basic Information:

  VIRBase ID:  

VHID00429553

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-11-3p:  MIMAT0002181          LPGAT1:  NM_014873     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-11-3p	LPGAT1
miRBase Accession/Entrez ID	MIMAT0002181	9926
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAM34A//FAM34A1//NET8

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LPGAT1	chr1:211975344(-) A-I      intronic chr1:211977295(-) A-I      intronic chr1:211977289(-) A-I      intronic chr1:211960773(-) A-I      intronic chr1:211960783(-) A-I      intronic chr1:211977276(-) A-I      intronic chr1:211977373(-) A-I      intronic chr1:211997088(-) A-I      intronic chr1:211971914(-) A-I      intronic chr1:211998655(-) A-I      intronic chr1:211997681(-) A-I      intronic chr1:211997675(-) A-I      intronic chr1:211997656(-) A-I      intronic chr1:211971942(-) A-I      intronic chr1:212002738(-) A-I      intronic chr1:211977328(-) A-I      intronic chr1:211993164(-) A-I      intronic chr1:211997590(-) A-I      intronic chr1:211944295(-) A-I      intronic chr1:211997610(-) A-I      intronic chr1:211997614(-) A-I      intronic chr1:211990844(-) A-I      intronic chr1:211992725(-) A-I      intronic chr1:211953459(-) A-I      intronic chr1:211997626(-) A-I      intronic chr1:211994486(-) A-I      intronic chr1:211944993(-) A-I      intronic chr1:211997638(-) A-I      intronic chr1:211997655(-) A-I      intronic chr1:211991468(-) A-I      intronic chr1:211929925(-) A-I      intronic chr1:211977681(-) A-I      intronic chr1:211997662(-) A-I      intronic chr1:211991427(-) A-I      intronic chr1:211977382(-) A-I      intronic chr1:211929509(-) A-I      intronic chr1:211947515(-) A-I      intronic chr1:211929495(-) A-I      intronic chr1:211979339(-) A-I      intronic chr1:211977351(-) A-I      intronic chr1:211977347(-) A-I      intronic chr1:211977343(-) A-I      intronic chr1:211979600(-) A-I      intronic chr1:211977294(-) A-I      intronic chr1:211975416(-) A-I      intronic chr1:211975408(-) A-I      intronic chr1:211975254(-) A-I      intronic chr1:211975224(-) A-I      intronic chr1:211975196(-) A-I      intronic chr1:211974963(-) A-I      intronic chr1:211974950(-) A-I      intronic chr1:211974835(-) A-I      intronic chr1:211974800(-) A-I      intronic chr1:211971898(-) A-I      intronic chr1:211971768(-) A-I      intronic chr1:211989253(-) A-I      intronic chr1:211970428(-) A-I      intronic chr1:211989259(-) A-I      intronic chr1:211989285(-) A-I      intronic chr1:211967937(-) A-I      intronic chr1:211967915(-) A-I      intronic chr1:211967875(-) A-I      intronic chr1:211967814(-) A-I      intronic chr1:211990731(-) A-I      intronic chr1:211990746(-) A-I      intronic chr1:211990789(-) A-I      intronic chr1:211967782(-) A-I      intronic chr1:211990813(-) A-I      intronic chr1:211966343(-) A-I      intronic chr1:211966289(-) A-I      intronic chr1:211929492(-) A-I      intronic chr1:211991344(-) A-I      intronic chr1:211992643(-) A-I      intronic chr1:211994596(-) A-I      intronic chr1:211991309(-) A-I      intronic chr1:211929386(-) A-I      intronic chr1:211944276(-) A-I      intronic chr1:211991292(-) A-I      intronic chr1:211944188(-) A-I      intronic chr1:211991288(-) A-I      intronic chr1:211944938(-) A-I      intronic chr1:211948625(-) A-I      intronic chr1:211992798(-) A-I      intronic chr1:211958181(-) A-I      intronic chr1:211991282(-) A-I      intronic chr1:211991273(-) A-I      intronic chr1:211997724(-) A-I      intronic chr1:211947583(-) A-I      intronic chr1:211948596(-) A-I      intronic chr1:211958198(-) A-I      intronic chr1:211958206(-) A-I      intronic chr1:211995951(-) A-I      intronic chr1:211958278(-) A-I      intronic chr1:211992800(-) A-I      intronic chr1:211958322(-) A-I      intronic chr1:211996001(-) A-I      intronic chr1:211959143(-) A-I      intronic chr1:211959176(-) A-I      intronic chr1:211992721(-) A-I      intronic chr1:211996037(-) A-I      intronic chr1:211997023(-) A-I      intronic chr1:211959199(-) A-I      intronic chr1:211998569(-) A-I      intronic chr1:211991269(-) A-I      intronic chr1:211959222(-) A-I      intronic chr1:211979439(-) A-I      intronic chr1:211977615(-) A-I      intronic chr1:211992812(-) A-I      intronic chr1:211991262(-) A-I      intronic chr1:211991253(-) A-I      intronic chr1:211940592(-) A-I      intronic chr1:211960786(-) A-I      intronic chr1:211992632(-) A-I      intronic chr1:211991345(-) A-I      intronic chr1:211991249(-) A-I      intronic chr1:211998580(-) A-I      intronic chr1:211965006(-) A-I      intronic chr1:211997062(-) A-I      intronic chr1:211940577(-) A-I      intronic chr1:211990830(-) A-I      intronic chr1:211944392(-) A-I      intronic chr1:211966064(-) A-I      intronic chr1:211966151(-) A-I      intronic chr1:211992651(-) A-I      intronic chr1:211979539(-) A-I      intronic chr1:211966164(-) A-I      intronic chr1:211979555(-) A-I      intronic chr1:211997220(-) A-I      intronic chr1:211966223(-) A-I      intronic chr1:211997559(-) A-I      intronic chr1:211993122(-) A-I      intronic chr1:211979568(-) A-I      intronic chr1:211998581(-) A-I      intronic chr1:211998636(-) A-I      intronic chr1:211998650(-) A-I      intronic chr1:211947564(-) A-I      intronic chr1:211998694(-) A-I      intronic chr1:211999240(-) A-I      intronic chr1:211999264(-) A-I      intronic chr1:211997589(-) A-I      intronic chr1:211940573(-) A-I      intronic chr1:211966225(-) A-I      intronic chr1:211959131(-) A-I      intronic chr1:211994584(-) A-I      intronic chr1:211998626(-) A-I      intronic chr1:211964941(-) A-I      intronic chr1:211929930(-) A-I      intronic chr1:211977445(-) A-I      intronic chr1:211994515(-) A-I      intronic chr1:211949836(-) A-I      intronic chr1:211944317(-) A-I      intronic chr1:211971968(-) A-I      intronic chr1:211929840(-) A-I      intronic chr1:211977512(-) A-I      intronic chr1:211991404(-) A-I      intronic chr1:211998649(-) A-I      intronic chr1:211970353(-) A-I      intronic chr1:211974880(-) A-I      intronic chr1:211974967(-) A-I      intronic chr1:211929879(-) A-I      intronic chr1:211967810(-) A-I      intronic chr1:211979566(-) A-I      intronic chr1:211947652(-) A-I      intronic chr1:211960576(-) A-I      intronic chr1:211933608(-) A-I      intronic chr1:211991179(-) A-I      intronic chr1:211996020(-) A-I      intronic chr1:211959127(-) A-I      intronic chr1:211959230(-) A-I      intronic chr1:211973635(-) A-I      intronic chr1:211991321(-) A-I      intronic chr1:211959126(-) A-I      intronic chr1:211957819(-) A-I      intronic chr1:211940578(-) A-I      intronic chr1:211945013(-) A-I      intronic chr1:211957677(-) A-I      intronic chr1:211945024(-) A-I      intronic chr1:211947637(-) A-I      intronic chr1:211973644(-) A-I      intronic chr1:211992576(-) A-I      intronic chr1:211949757(-) A-I      intronic chr1:211997702(-) A-I      intronic chr1:211958329(-) A-I      intronic chr1:211945009(-) A-I      intronic chr1:211964977(-) A-I      intronic chr1:211970489(-) A-I      intronic chr1:211990765(-) A-I      intronic chr1:211973533(-) A-I      intronic chr1:211947677(-) A-I      intronic chr1:211949716(-) A-I      intronic chr1:211965042(-) A-I      intronic chr1:211992579(-) A-I      intronic chr1:211975187(-) A-I      intronic chr1:211929450(-) A-I      intronic chr1:211930591(-) A-I      intronic chr1:211973582(-) A-I      intronic chr1:211979436(-) A-I      intronic chr1:211967898(-) A-I      intronic chr1:211971770(-) A-I      intronic chr1:211966913(-) A-I      intronic chr1:211991356(-) A-I      intronic chr1:211967671(-) A-I      intronic chr1:211971761(-) A-I      intronic chr1:211959167(-) A-I      intronic chr1:211974791(-) A-I      intronic chr1:211929842(-) A-I      intronic chr1:211949108(-) A-I      intronic chr1:211977305(-) A-I      intronic chr1:211964884(-) A-I      intronic chr1:211992720(-) A-I      intronic chr1:211968982(-) A-I      intronic chr1:211947601(-) A-I      intronic chr1:211973449(-) A-I      intronic chr1:211944213(-) A-I      intronic chr1:211949079(-) A-I      intronic chr1:211944291(-) A-I      intronic chr1:211970706(-) A-I      intronic chr1:211931856(-) A-I      intronic chr1:211996008(-) A-I      intronic chr1:211991433(-) A-I      intronic chr1:211992775(-) A-I      intronic chr1:211973709(-) A-I      intronic chr1:211951232(-) A-I      intronic chr1:211959100(-) A-I      intronic chr1:211974934(-) A-I      intronic chr1:211968874(-) A-I      intronic chr1:211957651(-) A-I      intronic chr1:211973473(-) A-I      intronic chr1:211989292(-) A-I      intronic chr1:211958326(-) A-I      intronic chr1:211944387(-) A-I      intronic chr1:211991450(-) A-I      intronic chr1:211997566(-) A-I      intronic chr1:211977297(-) A-I      intronic chr1:211971965(-) A-I      intronic chr1:211982283(-) A-I      intronic chr1:211974836(-) A-I      intronic chr1:211985017(-) A-I      intronic chr1:211971860(-) A-I      intronic chr1:211964927(-) A-I      intronic chr1:211944942(-) A-I      intronic chr1:211970380(-) A-I      intronic chr1:211998631(-) A-I      intronic chr1:211964838(-) A-I      intronic chr1:211964989(-) A-I      intronic chr1:211975256(-) A-I      intronic chr1:211967683(-) A-I      intronic chr1:211959122(-) A-I      intronic chr1:211971973(-) A-I      intronic chr1:211989351(-) A-I      intronic chr1:211997251(-) A-I      intronic chr1:211991371(-) A-I      intronic chr1:211971858(-) A-I      intronic chr1:211947678(-) A-I      intronic chr1:211960799(-) A-I      intronic chr1:211974968(-) A-I      intronic chr1:211977175(-) A-I      intronic chr1:211944246(-) A-I      intronic chr1:211964942(-) A-I      intronic chr1:211971810(-) A-I      intronic chr1:211977643(-) A-I      intronic chr1:211973509(-) A-I      intronic chr1:211973429(-) A-I      intronic chr1:211982375(-) A-I      intronic chr1:211977296(-) A-I      intronic chr1:211975322(-) A-I      intronic chr1:211958310(-) A-I      intronic chr1:211965003(-) A-I      intronic chr1:211998688(-) A-I      intronic chr1:211960669(-) A-I      intronic chr1:211977619(-) A-I      intronic chr1:211947574(-) A-I      intronic chr1:211957797(-) A-I      intronic chr1:211971940(-) A-I      intronic chr1:211966242(-) A-I      intronic chr1:211945112(-) A-I      intronic chr1:211998596(-) A-I      intronic chr1:211957814(-) A-I      intronic chr1:211993243(-) A-I      intronic chr1:211971809(-) A-I      intronic chr1:211957685(-) A-I      intronic chr1:211975242(-) A-I      intronic chr1:211991458(-) A-I      intronic chr1:211974940(-) A-I      intronic chr1:211963161(-) A-I      intronic chr1:211959191(-) A-I      intronic chr1:211993244(-) A-I      intronic chr1:211998612(-) A-I      intronic chr1:211977304(-) A-I      intronic chr1:211929727(-) A-I      intronic chr1:211959045(-) A-I      intronic chr1:211997719(-) A-I      intronic chr1:211993084(-) A-I      intronic chr1:211947619(-) A-I      intronic chr1:211977493(-) A-I      intronic chr1:211999219(-) A-I      intronic chr1:211947636(-) A-I      intronic chr1:211994498(-) A-I      intronic chr1:211970372(-) A-I      intronic chr1:211966236(-) A-I      intronic chr1:211973521(-) A-I      intronic chr1:211960675(-) A-I      intronic chr1:211966232(-) A-I      intronic chr1:211945040(-) A-I      intronic chr1:211991350(-) A-I      intronic chr1:211945126(-) A-I      intronic chr1:211991369(-) A-I      intronic chr1:211973567(-) A-I      intronic chr1:211979520(-) A-I      intronic chr1:211989193(-) A-I      intronic chr1:211965002(-) A-I      intronic chr1:211975177(-) A-I      intronic chr1:211977233(-) A-I      intronic chr1:211960747(-) A-I      intronic chr1:211973475(-) A-I      intronic chr1:211929430(-) A-I      intronic chr1:211989249(-) A-I      intronic chr1:211990801(-) A-I      intronic chr1:211971910(-) A-I      intronic chr1:211979493(-) A-I      intronic chr1:211947700(-) A-I      intronic chr1:211977224(-) A-I      intronic chr1:211994516(-) A-I      intronic chr1:211999263(-) A-I      intronic chr1:211947573(-) A-I      intronic chr1:211929839(-) A-I      intronic chr1:211947582(-) A-I      intronic chr1:211930520(-) A-I      intronic chr1:211966233(-) A-I      intronic chr1:211977170(-) A-I      intronic chr1:211966136(-) A-I      intronic chr1:211966280(-) A-I      intronic chr1:211990791(-) A-I      intronic chr1:211970341(-) A-I      intronic chr1:211979384(-) A-I      intronic chr1:211977665(-) A-I      intronic chr1:211958284(-) A-I      intronic chr1:211998671(-) A-I      intronic chr1:211974842(-) A-I      intronic chr1:211977596(-) A-I      intronic chr1:211979519(-) A-I      intronic chr1:211970432(-) A-I      intronic chr1:211970381(-) A-I      intronic chr1:211991370(-) A-I      intronic chr1:211966182(-) A-I      intronic chr1:211967912(-) A-I      intronic chr1:211973642(-) A-I      intronic chr1:211995875(-) A-I      intronic chr1:211974887(-) A-I      intronic chr1:211997678(-) A-I      intronic chr1:211960632(-) A-I      intronic chr1:211971862(-) A-I      intronic chr1:211947544(-) A-I      intronic chr1:211996038(-) A-I      intronic chr1:211947560(-) A-I      intronic chr1:211998654(-) A-I      intronic chr1:211995953(-) A-I      intronic chr1:211967047(-) A-I      intronic chr1:211966860(-) A-I      intronic chr1:211947590(-) A-I      intronic chr1:211944983(-) A-I      intronic chr1:211975318(-) A-I      intronic chr1:211975394(-) A-I      intronic chr1:211963131(-) A-I      intronic chr1:211958335(-) A-I      intronic chr1:211979494(-) A-I      intronic chr1:211960748(-) A-I      intronic chr1:211973597(-) A-I      intronic chr1:211975348(-) A-I      intronic chr1:211966872(-) A-I      intronic chr1:211979422(-) A-I      intronic chr1:211967914(-) A-I      intronic chr1:211929775(-) A-I      intronic chr1:211977279(-) A-I      intronic chr1:211959128(-) A-I      intronic chr1:211945023(-) A-I      intronic chr1:211977200(-) A-I      intronic chr1:211958325(-) A-I      intronic chr1:211975259(-) A-I      intronic chr1:211964924(-) A-I      intronic chr1:211957750(-) A-I      intronic chr1:211975204(-) A-I      intronic chr1:211973636(-) A-I      intronic chr1:211975396(-) A-I      intronic chr1:211991428(-) A-I      intronic chr1:211990697(-) A-I      intronic chr1:211945014(-) A-I      intronic chr1:211985092(-) A-I      intronic chr1:211957792(-) A-I      intronic chr1:211996081(-) A-I      intronic chr1:211994476(-) A-I      intronic chr1:211932700(-) A-I      intronic chr1:211997616(-) A-I      intronic chr1:211958323(-) A-I      intronic chr1:211966829(-) A-I      intronic chr1:211973658(-) A-I      intronic chr1:211973515(-) A-I      intronic chr1:211991315(-) A-I      intronic chr1:211971854(-) A-I      intronic chr1:211991346(-) A-I      intronic chr1:211994432(-) A-I      intronic chr1:211967772(-) A-I      intronic chr1:211973474(-) A-I      intronic chr1:211973415(-) A-I      intronic chr1:211971943(-) A-I      intronic chr1:211947725(-) A-I      intronic chr1:211995874(-) A-I      intronic chr1:211960609(-) A-I      intronic chr1:211929900(-) A-I      intronic chr1:211991305(-) A-I      intronic chr1:211966218(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LPGAT1	chr1:211968982(-) A-I intron -    22327324 chr1:211970432(-) A-I intron -    22327324 chr1:211916905(-) A-I exon 3'UTR    21960545 chr1:211973515(-) A-I intron -    21960545 chr1:211997616(-) A-I intron -    21960545 chr1:211998654(-) A-I intron -    21960545 chr1:211921995(-) T-G exon 3'UTR    22484847 chr1:211922034(-) T-C exon 3'UTR    22484847 chr1:211922035(-) C-T exon 3'UTR    22484847 chr1:211929775(-) A-G intron -    22484847 chr1:211940578(-) A-G intron -    22484847 chr1:211944213(-) A-G intron -    22484847 chr1:211944317(-) A-G intron -    22484847 chr1:211944387(-) A-G intron -    22484847 chr1:211945023(-) A-G intron -    22484847 chr1:211945126(-) A-G intron -    22484847 chr1:211947652(-) A-G intron -    22484847 chr1:211947678(-) A-G intron -    22484847 chr1:211947725(-) A-G intron -    22484847 chr1:211949079(-) A-G intron -    22484847 chr1:211949108(-) A-G intron -    22484847 chr1:211953223(-) A-G intron -    22484847 chr1:211953257(-) G-A intron -    22484847 chr1:211957677(-) A-G intron -    22484847 chr1:211957750(-) A-G intron -    22484847 chr1:211957792(-) A-G intron -    22484847 chr1:211957797(-) A-G intron -    22484847 chr1:211957814(-) A-G intron -    22484847 chr1:211957819(-) A-G intron -    22484847 chr1:211958284(-) A-G intron -    22484847 chr1:211958323(-) A-G intron -    22484847 chr1:211958326(-) A-G intron -    22484847 chr1:211958329(-) A-G intron -    22484847 chr1:211959045(-) A-G intron -    22484847 chr1:211959100(-) A-G intron -    22484847 chr1:211959122(-) A-G intron -    22484847 chr1:211959126(-) A-G intron -    22484847 chr1:211959127(-) A-G intron -    22484847 chr1:211959128(-) A-G intron -    22484847 chr1:211959131(-) A-G intron -    22484847 chr1:211959191(-) A-G intron -    22484847 chr1:211959230(-) A-G intron -    22484847 chr1:211960669(-) A-G intron -    22484847 chr1:211960747(-) A-G intron -    22484847 chr1:211960799(-) A-G intron -    22484847 chr1:211963131(-) A-G intron -    22484847 chr1:211963161(-) A-G intron -    22484847 chr1:211964838(-) A-G intron -    22484847 chr1:211965002(-) A-G intron -    22484847 chr1:211966136(-) A-G intron -    22484847 chr1:211966233(-) A-G intron -    22484847 chr1:211966236(-) A-G intron -    22484847 chr1:211966242(-) A-G intron -    22484847 chr1:211966280(-) A-G intron -    22484847 chr1:211966913(-) A-G intron -    22484847 chr1:211967047(-) A-G intron -    22484847 chr1:211967671(-) A-G intron -    22484847 chr1:211967772(-) A-G intron -    22484847 chr1:211967914(-) A-G intron -    22484847 chr1:211968874(-) A-G intron -    22484847 chr1:211968982(-) A-G intron -    22484847 chr1:211970353(-) A-G intron -    22484847 chr1:211970372(-) A-G intron -    22484847 chr1:211970380(-) A-G intron -    22484847 chr1:211970381(-) A-G intron -    22484847 chr1:211970432(-) A-G intron -    22484847 chr1:211971858(-) A-G intron -    22484847 chr1:211971910(-) A-G intron -    22484847 chr1:211973415(-) A-G intron -    22484847 chr1:211973429(-) A-G intron -    22484847 chr1:211973474(-) A-G intron -    22484847 chr1:211973475(-) A-G intron -    22484847 chr1:211973515(-) A-G intron -    22484847 chr1:211973635(-) A-G intron -    22484847 chr1:211973642(-) A-G intron -    22484847 chr1:211973658(-) A-G intron -    22484847 chr1:211974836(-) A-G intron -    22484847 chr1:211974842(-) A-G intron -    22484847 chr1:211974880(-) A-G intron -    22484847 chr1:211975177(-) A-G intron -    22484847 chr1:211975187(-) A-G intron -    22484847 chr1:211975204(-) A-G intron -    22484847 chr1:211975242(-) A-G intron -    22484847 chr1:211975256(-) A-G intron -    22484847 chr1:211975259(-) A-G intron -    22484847 chr1:211975447(-) C-T intron -    22484847 chr1:211975455(-) C-T intron -    22484847 chr1:211977297(-) A-G intron -    22484847 chr1:211977493(-) A-G intron -    22484847 chr1:211977596(-) A-G intron -    22484847 chr1:211979436(-) A-G intron -    22484847 chr1:211979494(-) A-G intron -    22484847 chr1:211979519(-) A-G intron -    22484847 chr1:211979520(-) A-G intron -    22484847 chr1:211979566(-) A-G intron -    22484847 chr1:211989249(-) A-G intron -    22484847 chr1:211989351(-) A-G intron -    22484847 chr1:211990697(-) A-G intron -    22484847 chr1:211990801(-) A-G intron -    22484847 chr1:211991301(-) G-A intron -    22484847 chr1:211991302(-) C-T intron -    22484847 chr1:211991305(-) A-G intron -    22484847 chr1:211991315(-) A-G intron -    22484847 chr1:211991321(-) A-G intron -    22484847 chr1:211991350(-) A-G intron -    22484847 chr1:211991356(-) A-G intron -    22484847 chr1:211991369(-) A-G intron -    22484847 chr1:211991370(-) A-G intron -    22484847 chr1:211991404(-) A-G intron -    22484847 chr1:211991428(-) A-G intron -    22484847 chr1:211991433(-) A-G intron -    22484847 chr1:211991450(-) A-G intron -    22484847 chr1:211991458(-) A-G intron -    22484847 chr1:211992579(-) A-G intron -    22484847 chr1:211992775(-) A-G intron -    22484847 chr1:211993243(-) A-G intron -    22484847 chr1:211993244(-) A-G intron -    22484847 chr1:211994476(-) A-G intron -    22484847 chr1:211994498(-) A-G intron -    22484847 chr1:211996008(-) A-G intron -    22484847 chr1:211996020(-) A-G intron -    22484847 chr1:211996038(-) A-G intron -    22484847 chr1:211996081(-) A-G intron -    22484847 chr1:211997251(-) A-G intron -    22484847 chr1:211997566(-) A-G intron -    22484847 chr1:211997616(-) A-G intron -    22484847 chr1:211997719(-) A-G intron -    22484847 chr1:211998612(-) A-G intron -    22484847 chr1:211998626(-) A-G intron -    22484847 chr1:211998631(-) A-G intron -    22484847 chr1:211998654(-) A-G intron -    22484847 chr1:211998688(-) A-G intron -    22484847 chr1:211999219(-) A-G intron -    22484847 chr1:211999263(-) A-G intron -    22484847 chr1:211999301(-) G-T intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LPGAT1	chr1:211917051-211917052(-) Cm 3'UTR       - chr1:211918992-211918993(-) m6A 3'UTR       24981863//28052920 chr1:211919019-211919020(-) m6A 3'UTR       24981863//28052920 chr1:211919024-211919025(-) m6A 3'UTR       24981863//28052920 chr1:211919134-211919135(-) m6A 3'UTR       24981863//26404942 chr1:211919140-211919141(-) m6A 3'UTR       24981863//26404942 chr1:211919155-211919156(-) m6A 3'UTR       24981863//26404942 chr1:211920797-211920798(-) m6A 3'UTR       27773535 chr1:211920830-211920831(-) m6A 3'UTR       27773535 chr1:211920887-211920888(-) m6A 3'UTR       27773535 chr1:211922260-211922261(-) m6A 3'UTR       26404942 chr1:211922275-211922276(-) m6A 3'UTR       26404942 chr1:211922701-211922702(-) m6A 3'UTR       24981863 chr1:211922724-211922725(-) m6A 3'UTR       24981863 chr1:211922747-211922748(-) m6A 3'UTR       24981863 chr1:211922775-211922776(-) m6A 3'UTR       24981863 chr1:211922808-211922809(-) m6A 3'UTR       24981863 chr1:211922947-211922948(-) m6A 3'UTR       26404942//27773535 chr1:211922991-211922992(-) m6A 3'UTR       26404942//27773535 chr1:211923032-211923033(-) m6A 3'UTR       24981863//26404942//27773535 chr1:211923199-211923200(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:211923227-211923228(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:211956717-211956718(-) m6A CDS//intron       27773535 chr1:211960976-211960977(-) m6A CDS//intron       27773535 chr1:211960989-211960990(-) m6A CDS//intron       27773535 chr1:211961019-211961020(-) m6A CDS//intron       27773535 chr1:211966416-211966417(-) m6A CDS//exon       24981863 chr1:211966423-211966424(-) m6A CDS//exon       24981863 chr1:211966549-211966550(-) m6A exon//intron       24981863 chr1:211966654-211966655(-) m6A exon//intron       27773535 chr1:212003571-212003572(-) m6A 5'UTR//exon//intron       27773536 chr1:212004073-212004074(-) m6A 5'UTR       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LPGAT1	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-11-3p
Interactor2: LPGAT1

Evidence Support:

Weak-Evidence	Microarray
Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	ViRBase//VmiReg

References:

PMID	22174674	Target region	None
Source	ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	DG-75 cells//EA.hy926 cells	Interactor2 expression	Downregulation
Description	As KSHV putative direct targets we extracted transcripts that were significantly down-regulated significantly in the replicate experiments, and which contained at least one seed-match to one of the KSHV miRNAs. We identified 704 putative direct targets in DG-75 cells (Figure 3B), and 980 putative direct targets in EA.hy926 cells (Figure 3C). A complete list of putative direct targets can be found in Dataset S2 for DG-75 cells and in Dataset S3 for EA.hy926 cells. The overlap between the two datasets contained 153 putative direct targets (Dataset S4).