Detail Information

Basic Information:


  VIRBase ID:  

VHID00428564

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-11-3p:           ESRRG:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-11-3p ESRRG
miRBase
Accession/Entrez ID		 MIMAT0002181 2104
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - ERR-gamma//ERR3//ERRg//ERRgamma//NR3B3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ESRRG
chr1:216948242(-) A-I      intronic
chr1:217035596(-) A-I      ncRNA
chr1:216948267(-) A-I      intronic
chr1:216948272(-) A-I      intronic
chr1:216948276(-) A-I      intronic
chr1:216948288(-) A-I      intronic
chr1:217053537(-) A-I      intronic
chr1:217075351(-) A-I      intronic
chr1:217053532(-) A-I      intronic
chr1:217134088(-) A-I      intronic
chr1:217075117(-) A-I      intronic
chr1:217107664(-) A-I      intronic
chr1:217107693(-) A-I      intronic
chr1:217107694(-) A-I      intronic
chr1:217162597(-) A-I      intronic
chr1:217060279(-) A-I      intronic
chr1:217226697(-) A-I      intronic
chr1:217106048(-) A-I      intronic
chr1:217239669(-) A-I      intronic
chr1:217226721(-) A-I      intronic
chr1:216941970(-) A-I      intronic
chr1:217107689(-) A-I      intronic
chr1:217226734(-) A-I      intronic
chr1:217247658(-) A-I      intronic
chr1:217106038(-) A-I      intronic
chr1:217107699(-) A-I      intronic
chr1:217046800(-) A-I      intronic
chr1:216909078(-) A-I      intronic
chr1:217226431(-) A-I      intronic
chr1:216970413(-) A-I      intronic
chr1:216949144(-) A-I      intronic
chr1:216906034(-) A-I      intronic
chr1:217121736(-) A-I      intronic
chr1:217065258(-) A-I      intronic
chr1:217105459(-) A-I      intronic
chr1:217247929(-) A-I      intronic
chr1:217075177(-) A-I      intronic
chr1:216905840(-) A-I      intronic
chr1:217105502(-) A-I      intronic
chr1:217041562(-) A-I      intronic
chr1:217003168(-) A-I      intronic
chr1:217120318(-) A-I      intronic
chr1:217225236(-) A-I      intronic
chr1:217205050(-) A-I      intronic
chr1:217134092(-) A-I      intronic
chr1:217189236(-) A-I      intronic
chr1:217003169(-) A-I      intronic
chr1:216703250(-) A-I      intronic
chr1:216909237(-) A-I      intronic
chr1:217106161(-) A-I      intronic
chr1:217003175(-) A-I      intronic
chr1:217167987(-) A-I      intronic
chr1:216848530(-) A-I      intronic
chr1:217105434(-) A-I      intronic
chr1:216818996(-) A-I      intronic
chr1:217006043(-) A-I      intronic
chr1:217041567(-) A-I      intronic
chr1:217267043(-) A-I      intronic
chr1:217105446(-) A-I      intronic
chr1:216948282(-) A-I      intronic
chr1:216948165(-) A-I      intronic
chr1:216848040(-) A-I      intronic
chr1:217225233(-) A-I      intronic
chr1:217106159(-) A-I      intronic
chr1:217189210(-) A-I      intronic
chr1:217106014(-) A-I      intronic
chr1:217051019(-) A-I      intronic
chr1:216909066(-) A-I      intronic
chr1:217107531(-) A-I      intronic
chr1:217225202(-) A-I      intronic
chr1:217074912(-) A-I      intronic
chr1:216703224(-) A-I      intronic
chr1:217107519(-) A-I      intronic
chr1:217074980(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ESRRG
chr1:217106201(-) A-I intron -    21960545
chr1:217106221(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ESRRG
chr1:216679291-216679292(-) m6A 3'UTR       27773535
chr1:216679304-216679305(-) m6A 3'UTR       27773535
chr1:216679314-216679315(-) m6A 3'UTR       27773535
chr1:216679526-216679527(-) m6A 3'UTR       27773535//22575960//22608085
chr1:216679609-216679610(-) m6A 3'UTR       25456834//24981863//27773535//22575960//22608085
chr1:216679649-216679650(-) m6A 3'UTR       25456834//24981863//27773535//22575960//22608085
chr1:216679660-216679661(-) m6A 3'UTR       25456834//24981863//27773535//22575960//22608085
chr1:216679743-216679744(-) m6A 3'UTR       27773535//22608085
chr1:216680145-216680146(-) m6A 3'UTR       27773535//22608085
chr1:216680170-216680171(-) m6A 3'UTR       27773535//22575960//22608085
chr1:216680206-216680207(-) m6A 3'UTR       25456834//27773535//22575960//22608085
chr1:216680228-216680229(-) m6A 3'UTR       25456834//27773535//22575960//22608085
chr1:216680313-216680314(-) m6A CDS       25456834//27773535//22575960
chr1:216680340-216680341(-) m6A CDS       27773535
chr1:216680378-216680379(-) m6A CDS       27773535
chr1:216850426-216850427(-) m6A CDS//intron       27773535
chr1:216850511-216850512(-) m6A CDS//intron       27773535
chr1:216850549-216850550(-) m6A CDS//intron       27773535
chr1:216850737-216850738(-) m6A CDS//intron       27773535
chr1:216850763-216850764(-) m6A CDS//intron       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ESRRG
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-11-3p
Interactor2: ESRRG

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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