Basic Information:

  VIRBase ID:  

VHID00427292

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10b:  MIMAT0002180          FEM1C:  NM_020177     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10b	FEM1C
miRBase Accession/Entrez ID	MIMAT0002180	56929
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EUROIMAGE686608//EUROIMAGE783647//FEM1A

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FEM1C	chr5:114856756-114856757(-) m6A 3'UTR       27773535 chr5:114856829-114856830(-) m6A 3'UTR       27773535 chr5:114856862-114856863(-) m6A 3'UTR       27773535 chr5:114858758-114858759(-) m6A 3'UTR       27773535 chr5:114859517-114859518(-) m6A 3'UTR       27773535 chr5:114859526-114859527(-) m6A 3'UTR       27773535 chr5:114859546-114859547(-) m6A 3'UTR       27773535 chr5:114860027-114860028(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr5:114860175-114860176(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860185-114860186(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860233-114860234(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:114860284-114860285(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:114860386-114860387(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860456-114860457(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860473-114860474(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860478-114860479(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860577-114860578(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860694-114860695(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:114860809-114860810(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr5:114860950-114860951(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:114860987-114860988(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861000-114861001(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861017-114861018(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861037-114861038(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861088-114861089(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861134-114861135(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861143-114861144(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr5:114861271-114861272(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:114878710-114878711(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:114878753-114878754(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:114878779-114878780(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:114878908-114878909(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr5:114878952-114878953(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:114879075-114879076(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879145-114879146(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879177-114879178(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879195-114879196(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879243-114879244(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879284-114879285(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr5:114879336-114879337(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr5:114880234-114880235(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536//22608085 chr5:114880267-114880268(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536 chr5:114880294-114880295(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536 chr5:114880385-114880386(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FEM1C	Cytosol HeLa-S3 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10b
Interactor2: FEM1C

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg