Basic Information:

  VIRBase ID:  

VHID00426335

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.9060

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10b:  MIMAT0002180          SOS1:  NM_001382395     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10b	SOS1
miRBase Accession/Entrez ID	MIMAT0002180	6654
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GF1//GGF1//GINGF//HGF//NS4//SOS-1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SOS1	chr2:39339121(-) A-I      intronic chr2:39340050(-) A-I      intronic chr2:39340453(-) A-I      intronic chr2:39340464(-) A-I      intronic chr2:39340488(-) A-I      intronic chr2:39341940(-) A-I      intronic chr2:39341976(-) A-I      intronic chr2:39341995(-) A-I      intronic chr2:39342653(-) A-I      intronic chr2:39342704(-) A-I      intronic chr2:39280051(-) A-I      intronic chr2:39292401(-) A-I      intronic chr2:39292479(-) A-I      intronic chr2:39292485(-) A-I      intronic chr2:39291626(-) A-I      intronic chr2:39280194(-) A-I      intronic chr2:39291566(-) A-I      intronic chr2:39291576(-) A-I      intronic chr2:39291580(-) A-I      intronic chr2:39291581(-) A-I      intronic chr2:39291586(-) A-I      intronic chr2:39291588(-) A-I      intronic chr2:39291600(-) A-I      intronic chr2:39291605(-) A-I      intronic chr2:39291610(-) A-I      intronic chr2:39291612(-) A-I      intronic chr2:39291613(-) A-I      intronic chr2:39291616(-) A-I      intronic chr2:39291617(-) A-I      intronic chr2:39291618(-) A-I      intronic chr2:39291496(-) A-I      intronic chr2:39237388(-) A-I      intronic chr2:39237371(-) A-I      intronic chr2:39255166(-) A-I      intronic chr2:39237345(-) A-I      intronic chr2:39291565(-) A-I      intronic chr2:39291650(-) A-I      intronic chr2:39292369(-) A-I      intronic chr2:39292370(-) A-I      intronic chr2:39292372(-) A-I      intronic chr2:39292390(-) A-I      intronic chr2:39292400(-) A-I      intronic chr2:39291501(-) A-I      intronic chr2:39260924(-) A-I      intronic chr2:39288667(-) A-I      intronic chr2:39339066(-) A-I      intronic chr2:39339095(-) A-I      intronic chr2:39260905(-) A-I      intronic chr2:39291555(-) A-I      intronic chr2:39260879(-) A-I      intronic chr2:39260874(-) A-I      intronic chr2:39255167(-) A-I      intronic chr2:39255165(-) A-I      intronic chr2:39291532(-) A-I      intronic chr2:39255148(-) A-I      intronic chr2:39255139(-) A-I      intronic chr2:39237405(-) A-I      intronic chr2:39291533(-) A-I      intronic chr2:39291534(-) A-I      intronic chr2:39291541(-) A-I      intronic chr2:39292402(-) A-I      intronic chr2:39292405(-) A-I      intronic chr2:39292407(-) A-I      intronic chr2:39292418(-) A-I      intronic chr2:39292419(-) A-I      intronic chr2:39292422(-) A-I      intronic chr2:39292477(-) A-I      intronic chr2:39291556(-) A-I      intronic chr2:39291560(-) A-I      intronic chr2:39291563(-) A-I      intronic chr2:39291564(-) A-I      intronic chr2:39260897(-) A-I      intronic chr2:39260881(-) A-I      intronic chr2:39339113(-) A-I      intronic chr2:39325906(-) A-I      intronic chr2:39325817(-) A-I      intronic chr2:39325787(-) A-I      intronic chr2:39325786(-) A-I      intronic chr2:39324702(-) A-I      intronic chr2:39323980(-) A-I      intronic chr2:39323964(-) A-I      intronic chr2:39323915(-) A-I      intronic chr2:39323908(-) A-I      intronic chr2:39323859(-) A-I      intronic chr2:39323837(-) A-I      intronic chr2:39323832(-) A-I      intronic chr2:39323770(-) A-I      intronic chr2:39319409(-) A-I      intronic chr2:39257116(-) A-I      intronic chr2:39318305(-) A-I      intronic chr2:39318241(-) A-I      intronic chr2:39318223(-) A-I      intronic chr2:39318189(-) A-I      intronic chr2:39318174(-) A-I      intronic chr2:39318123(-) A-I      intronic chr2:39318115(-) A-I      intronic chr2:39318102(-) A-I      intronic chr2:39317798(-) A-I      intronic chr2:39317224(-) A-I      intronic chr2:39317156(-) A-I      intronic chr2:39317105(-) A-I      intronic chr2:39317102(-) A-I      intronic chr2:39317049(-) A-I      intronic chr2:39314988(-) A-I      intronic chr2:39314976(-) A-I      intronic chr2:39314968(-) A-I      intronic chr2:39314827(-) A-I      intronic chr2:39314156(-) A-I      intronic chr2:39314150(-) A-I      intronic chr2:39314149(-) A-I      intronic chr2:39314122(-) A-I      intronic chr2:39314092(-) A-I      intronic chr2:39314091(-) A-I      intronic chr2:39314082(-) A-I      intronic chr2:39314052(-) A-I      intronic chr2:39314051(-) A-I      intronic chr2:39314050(-) A-I      intronic chr2:39314022(-) A-I      intronic chr2:39314021(-) A-I      intronic chr2:39314016(-) A-I      intronic chr2:39260059(-) A-I      intronic chr2:39259998(-) A-I      intronic chr2:39259978(-) A-I      intronic chr2:39259916(-) A-I      intronic chr2:39257105(-) A-I      intronic chr2:39257104(-) A-I      intronic chr2:39255168(-) A-I      intronic chr2:39255104(-) A-I      intronic chr2:39230120(-) A-I      intronic chr2:39230075(-) A-I      intronic chr2:39230034(-) A-I      intronic chr2:39280207(-) A-I      intronic chr2:39280076(-) A-I      intronic chr2:39280072(-) A-I      intronic chr2:39275824(-) A-I      intronic chr2:39273649(-) A-I      intronic chr2:39273141(-) A-I      intronic chr2:39272982(-) A-I      intronic chr2:39272974(-) A-I      intronic chr2:39272966(-) A-I      intronic chr2:39272942(-) A-I      intronic chr2:39269709(-) A-I      intronic chr2:39267416(-) A-I      intronic chr2:39229359(-) A-I      intronic chr2:39267215(-) A-I      intronic chr2:39281174(-) A-I      intronic chr2:39260959(-) A-I      intronic chr2:39344281(-) A-I      intronic chr2:39260344(-) A-I      intronic chr2:39230002(-) A-I      intronic chr2:39228477(-) A-I      intronic chr2:39220503(-) A-I      intronic chr2:39333186(-) A-I      intronic chr2:39342632(-) A-I      intronic chr2:39342591(-) A-I      intronic chr2:39342590(-) A-I      intronic chr2:39342006(-) A-I      intronic chr2:39341990(-) A-I      intronic chr2:39341952(-) A-I      intronic chr2:39341938(-) A-I      intronic chr2:39341911(-) A-I      intronic chr2:39341908(-) A-I      intronic chr2:39260206(-) A-I      intronic chr2:39341906(-) A-I      intronic chr2:39341902(-) A-I      intronic chr2:39341808(-) A-I      intronic chr2:39341681(-) A-I      intronic chr2:39341569(-) A-I      intronic chr2:39341556(-) A-I      intronic chr2:39341530(-) A-I      intronic chr2:39341523(-) A-I      intronic chr2:39341471(-) A-I      intronic chr2:39340456(-) A-I      intronic chr2:39340400(-) A-I      intronic chr2:39340397(-) A-I      intronic chr2:39340032(-) A-I      intronic chr2:39339988(-) A-I      intronic chr2:39339710(-) A-I      intronic chr2:39339122(-) A-I      intronic chr2:39338906(-) A-I      intronic chr2:39338262(-) A-I      intronic chr2:39338250(-) A-I      intronic chr2:39338157(-) A-I      intronic chr2:39335934(-) A-I      intronic chr2:39335912(-) A-I      intronic chr2:39333278(-) A-I      intronic chr2:39333266(-) A-I      intronic chr2:39333264(-) A-I      intronic chr2:39333237(-) A-I      intronic chr2:39230091(-) A-I      intronic chr2:39333229(-) A-I      intronic chr2:39333192(-) A-I      intronic chr2:39333166(-) A-I      intronic chr2:39333141(-) A-I      intronic chr2:39281069(-) A-I      intronic chr2:39281177(-) A-I      intronic chr2:39281180(-) A-I      intronic chr2:39281197(-) A-I      intronic chr2:39281206(-) A-I      intronic chr2:39281207(-) A-I      intronic chr2:39281236(-) A-I      intronic chr2:39281243(-) A-I      intronic chr2:39281249(-) A-I      intronic chr2:39281273(-) A-I      intronic chr2:39281308(-) A-I      intronic chr2:39281324(-) A-I      intronic chr2:39281349(-) A-I      intronic chr2:39288696(-) A-I      intronic chr2:39289367(-) A-I      intronic chr2:39289459(-) A-I      intronic chr2:39344307(-) A-I      intronic chr2:39333107(-) A-I      intronic chr2:39333009(-) A-I      intronic chr2:39332919(-) A-I      intronic chr2:39332866(-) A-I      intronic chr2:39332539(-) A-I      intronic chr2:39332525(-) A-I      intronic chr2:39330090(-) A-I      intronic chr2:39330013(-) A-I      intronic chr2:39329974(-) A-I      intronic chr2:39329918(-) A-I      intronic chr2:39327122(-) A-I      intronic chr2:39327076(-) A-I      intronic chr2:39326977(-) A-I      intronic chr2:39325986(-) A-I      intronic chr2:39325943(-) A-I      intronic chr2:39289497(-) A-I      intronic chr2:39301408(-) A-I      intronic chr2:39325908(-) A-I      intronic chr2:39301409(-) A-I      intronic chr2:39301439(-) A-I      intronic chr2:39305946(-) A-I      intronic chr2:39305968(-) A-I      intronic chr2:39305984(-) A-I      intronic chr2:39306003(-) A-I      intronic chr2:39306053(-) A-I      intronic chr2:39306089(-) A-I      intronic chr2:39306741(-) A-I      intronic chr2:39306747(-) A-I      intronic chr2:39306760(-) A-I      intronic chr2:39306764(-) A-I      intronic chr2:39306773(-) A-I      intronic chr2:39306829(-) A-I      intronic chr2:39344246(-) A-I      intronic chr2:39306884(-) A-I      intronic chr2:39308854(-) A-I      intronic chr2:39325948(-) A-I      intronic chr2:39308858(-) A-I      intronic chr2:39343977(-) A-I      intronic chr2:39343897(-) A-I      intronic chr2:39312325(-) A-I      intronic chr2:39312439(-) A-I      intronic chr2:39312440(-) A-I      intronic chr2:39343760(-) A-I      intronic chr2:39342858(-) A-I      intronic chr2:39342852(-) A-I      intronic chr2:39342830(-) A-I      intronic chr2:39342806(-) A-I      intronic chr2:39342777(-) A-I      intronic chr2:39342724(-) A-I      intronic chr2:39342720(-) A-I      intronic chr2:39342701(-) A-I      intronic chr2:39342647(-) A-I      intronic chr2:39342639(-) A-I      intronic chr2:39288597(-) A-I      intronic chr2:39265620(-) A-I      intronic chr2:39344216(-) A-I      intronic chr2:39318261(-) A-I      intronic chr2:39327846(-) A-I      intronic chr2:39338211(-) A-I      intronic chr2:39324784(-) A-I      intronic chr2:39339671(-) A-I      intronic chr2:39333320(-) A-I      intronic chr2:39343793(-) A-I      intronic chr2:39324985(-) A-I      intronic chr2:39339663(-) A-I      intronic chr2:39306925(-) A-I      intronic chr2:39339637(-) A-I      intronic chr2:39271417(-) A-I      intronic chr2:39271312(-) A-I      intronic chr2:39317050(-) A-I      intronic chr2:39260840(-) A-I      intronic chr2:39343794(-) A-I      intronic chr2:39274879(-) A-I      intronic chr2:39339595(-) A-I      intronic chr2:39325930(-) A-I      intronic chr2:39333202(-) A-I      intronic chr2:39288707(-) A-I      intronic chr2:39324842(-) A-I      intronic chr2:39281070(-) A-I      intronic chr2:39220534(-) A-I      intronic chr2:39260019(-) A-I      intronic chr2:39315039(-) A-I      intronic chr2:39340538(-) A-I      intronic chr2:39271371(-) A-I      intronic chr2:39342688(-) A-I      intronic chr2:39339064(-) A-I      intronic chr2:39336224(-) A-I      intronic chr2:39342012(-) A-I      intronic chr2:39341875(-) A-I      intronic chr2:39339583(-) A-I      intronic chr2:39268331(-) A-I      intronic chr2:39255100(-) A-I      intronic chr2:39327017(-) A-I      intronic chr2:39292132(-) A-I      intronic chr2:39342746(-) A-I      intronic chr2:39318299(-) A-I      intronic chr2:39296459(-) A-I      intronic chr2:39333035(-) A-I      intronic chr2:39344298(-) A-I      intronic chr2:39332782(-) A-I      intronic chr2:39252551(-) A-I      intronic chr2:39317181(-) A-I      intronic chr2:39335958(-) A-I      intronic chr2:39267425(-) A-I      intronic chr2:39260779(-) A-I      intronic chr2:39340172(-) A-I      intronic chr2:39342778(-) A-I      intronic chr2:39296242(-) A-I      intronic chr2:39228377(-) A-I      intronic chr2:39296826(-) A-I      intronic chr2:39324881(-) A-I      intronic chr2:39327149(-) A-I      intronic chr2:39318192(-) A-I      intronic chr2:39336333(-) A-I      intronic chr2:39343845(-) A-I      intronic chr2:39260314(-) A-I      intronic chr2:39335785(-) A-I      intronic chr2:39220518(-) A-I      intronic chr2:39325774(-) A-I      intronic chr2:39238104(-) A-I      intronic chr2:39335808(-) A-I      intronic chr2:39327018(-) A-I      intronic chr2:39344235(-) A-I      intronic chr2:39340058(-) A-I      intronic chr2:39336254(-) A-I      intronic chr2:39339009(-) A-I      intronic chr2:39296269(-) A-I      intronic chr2:39317198(-) A-I      intronic chr2:39252619(-) A-I      intronic chr2:39341352(-) A-I      intronic chr2:39271381(-) A-I      intronic chr2:39324843(-) A-I      intronic chr2:39341989(-) A-I      intronic chr2:39296862(-) A-I      intronic chr2:39338976(-) A-I      intronic chr2:39275647(-) A-I      intronic chr2:39252629(-) A-I      intronic chr2:39339975(-) A-I      intronic chr2:39229988(-) A-I      intronic chr2:39343930(-) A-I      intronic chr2:39271223(-) A-I      intronic chr2:39336228(-) A-I      intronic chr2:39344364(-) A-I      intronic chr2:39338938(-) A-I      intronic chr2:39275715(-) A-I      intronic chr2:39343858(-) A-I      intronic chr2:39260873(-) A-I      intronic chr2:39344440(-) A-I      intronic chr2:39336148(-) A-I      intronic chr2:39335918(-) A-I      intronic chr2:39342621(-) A-I      intronic chr2:39252628(-) A-I      intronic chr2:39340014(-) A-I      intronic chr2:39344340(-) A-I      intronic chr2:39296485(-) A-I      intronic chr2:39339567(-) A-I      intronic chr2:39296315(-) A-I      intronic chr2:39340008(-) A-I      intronic chr2:39342694(-) A-I      intronic chr2:39339035(-) A-I      intronic chr2:39344308(-) A-I      intronic chr2:39327090(-) A-I      intronic chr2:39343854(-) A-I      intronic chr2:39296390(-) A-I      intronic chr2:39280182(-) A-I      intronic chr2:39340424(-) A-I      intronic chr2:39342782(-) A-I      intronic chr2:39317751(-) A-I      intronic chr2:39280111(-) A-I      intronic chr2:39327061(-) A-I      intronic chr2:39296236(-) A-I      intronic chr2:39341715(-) A-I      intronic chr2:39325777(-) A-I      intronic chr2:39341651(-) A-I      intronic chr2:39317754(-) A-I      intronic chr2:39280247(-) A-I      intronic chr2:39328053(-) A-I      intronic chr2:39275770(-) A-I      intronic chr2:39318070(-) A-I      intronic chr2:39336122(-) A-I      intronic chr2:39258708(-) A-I      intronic chr2:39339029(-) A-I      intronic chr2:39342787(-) A-I      intronic chr2:39271315(-) A-I      intronic chr2:39324888(-) A-I      intronic chr2:39260929(-) A-I      intronic chr2:39335842(-) A-I      intronic chr2:39344338(-) A-I      intronic chr2:39339681(-) A-I      intronic chr2:39343862(-) A-I      intronic chr2:39275666(-) A-I      intronic chr2:39332929(-) A-I      intronic chr2:39339089(-) A-I      intronic chr2:39339587(-) A-I      intronic chr2:39332531(-) A-I      intronic chr2:39342716(-) A-I      intronic chr2:39260279(-) A-I      intronic chr2:39324869(-) A-I      intronic chr2:39340429(-) A-I      intronic chr2:39295096(-) A-I      intronic chr2:39340557(-) A-I      intronic chr2:39339571(-) A-I      intronic chr2:39344441(-) A-I      intronic chr2:39326937(-) A-I      intronic chr2:39340130(-) A-I      intronic chr2:39344337(-) A-I      intronic chr2:39317674(-) A-I      intronic chr2:39342628(-) A-I      intronic chr2:39343909(-) A-I      intronic chr2:39253414(-) A-I      intronic chr2:39317057(-) A-I      intronic chr2:39296404(-) A-I      intronic chr2:39258705(-) A-I      intronic chr2:39271272(-) A-I      intronic chr2:39341870(-) A-I      intronic chr2:39269677(-) A-I      intronic chr2:39344285(-) A-I      intronic chr2:39281141(-) A-I      intronic chr2:39333249(-) A-I      intronic chr2:39271410(-) A-I      intronic chr2:39280128(-) A-I      intronic chr2:39317169(-) A-I      intronic chr2:39273058(-) A-I      intronic chr2:39238201(-) A-I      intronic chr2:39332517(-) A-I      intronic chr2:39340547(-) A-I      intronic chr2:39340071(-) A-I      intronic chr2:39343910(-) A-I      intronic chr2:39340170(-) A-I      intronic chr2:39238175(-) A-I      intronic chr2:39341652(-) A-I      intronic chr2:39317725(-) A-I      intronic chr2:39327130(-) A-I      intronic chr2:39338274(-) A-I      intronic chr2:39280048(-) A-I      intronic chr2:39327104(-) A-I      intronic chr2:39317755(-) A-I      intronic chr2:39335773(-) A-I      intronic chr2:39255123(-) A-I      intronic chr2:39339923(-) A-I      intronic chr2:39341876(-) A-I      intronic chr2:39342828(-) A-I      intronic chr2:39318289(-) A-I      intronic chr2:39326982(-) A-I      intronic chr2:39253452(-) A-I      intronic chr2:39317159(-) A-I      intronic chr2:39340439(-) A-I      intronic chr2:39317737(-) A-I      intronic chr2:39343853(-) A-I      intronic chr2:39325866(-) A-I      intronic chr2:39339647(-) A-I      intronic chr2:39327060(-) A-I      intronic chr2:39238133(-) A-I      intronic chr2:39288669(-) A-I      intronic chr2:39327085(-) A-I      intronic chr2:39343754(-) A-I      intronic chr2:39260062(-) A-I      intronic chr2:39336253(-) A-I      intronic chr2:39314894(-) A-I      intronic chr2:39343776(-) A-I      intronic chr2:39271376(-) A-I      intronic chr2:39294997(-) A-I      intronic chr2:39280114(-) A-I      intronic chr2:39327003(-) A-I      intronic chr2:39339689(-) A-I      intronic chr2:39275774(-) A-I      intronic chr2:39288705(-) A-I      intronic chr2:39344273(-) A-I      intronic chr2:39324883(-) A-I      intronic chr2:39280211(-) A-I      intronic chr2:39288640(-) A-I      intronic chr2:39344266(-) A-I      intronic chr2:39324885(-) A-I      intronic chr2:39332847(-) A-I      intronic chr2:39296868(-) A-I      intronic chr2:39325818(-) A-I      intronic chr2:39317673(-) A-I      intronic chr2:39257628(-) A-I      intronic chr2:39344374(-) A-I      intronic chr2:39255145(-) A-I      intronic chr2:39340017(-) A-I      intronic chr2:39333233(-) A-I      intronic chr2:39318188(-) A-I      intronic chr2:39294280(-) A-I      intronic chr2:39228331(-) A-I      intronic chr2:39228342(-) A-I      intronic chr2:39308154(-) A-I      intronic chr2:39341512(-) A-I      intronic chr2:39228273(-) A-I      intronic chr2:39342805(-) A-I      intronic chr2:39333178(-) A-I      intronic chr2:39338905(-) A-I      intronic chr2:39327839(-) A-I      intronic chr2:39292037(-) A-I      intronic chr2:39341985(-) A-I      intronic chr2:39328067(-) A-I      intronic chr2:39336160(-) A-I      intronic chr2:39327835(-) A-I      intronic chr2:39273125(-) A-I      intronic chr2:39314987(-) A-I      intronic chr2:39332537(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SOS1	chr2:39275647(-) A-I intron -    15545495 chr2:39275666(-) A-I intron -    15545495 chr2:39275710(-) A-I intron -    15545495 chr2:39275715(-) A-I intron -    15545495 chr2:39275770(-) A-I intron -    15545495 chr2:39275774(-) A-I intron -    15545495 chr2:39324774(-) A-I intron -    15342557 chr2:39324837(-) A-I intron -    15342557 chr2:39324842(-) A-I intron -    15342557 chr2:39324843(-) A-I intron -    15342557 chr2:39324869(-) A-I intron -    15342557 chr2:39324881(-) A-I intron -    15342557 chr2:39324885(-) A-I intron -    15342557 chr2:39324956(-) A-I intron -    15342557 chr2:39325818(-) A-I intron -    15342557 chr2:39220142(-) A-I intron -    22327324 chr2:39280049(-) A-I intron -    22327324 chr2:39292442(-) A-I intron -    22327324 chr2:39292449(-) A-I intron -    22327324 chr2:39339009(-) A-I intron -    22327324 chr2:39339577(-) A-I intron -    22327324 chr2:39340538(-) A-I intron -    22327324 chr2:39340547(-) A-I intron -    22327324 chr2:39342694(-) A-I intron -    22327324 chr2:39342787(-) A-I intron -    22327324 chr2:39340058(-) A-I intron -    21960545 chr2:39340068(-) A-I intron -    21960545 chr2:39292442(-) A-G intron -    22484847 chr2:39220142(-) A-G intron -    22484847 chr2:39220179(-) A-G intron -    22484847 chr2:39220185(-) A-G intron -    22484847 chr2:39220186(-) A-G intron -    22484847 chr2:39220205(-) A-G intron -    22484847 chr2:39229988(-) A-G intron -    22484847 chr2:39253414(-) A-G intron -    22484847 chr2:39253452(-) A-G intron -    22484847 chr2:39255160(-) G-A intron -    22484847 chr2:39255161(-) T-C intron -    22484847 chr2:39260314(-) A-G intron -    22484847 chr2:39271315(-) A-G intron -    22484847 chr2:39271326(-) A-G intron -    22484847 chr2:39271400(-) A-G intron -    22484847 chr2:39271410(-) A-G intron -    22484847 chr2:39271417(-) A-G intron -    22484847 chr2:39273058(-) A-G intron -    22484847 chr2:39280049(-) A-G intron -    22484847 chr2:39280111(-) A-G intron -    22484847 chr2:39292037(-) A-G intron -    22484847 chr2:39294997(-) A-G intron -    22484847 chr2:39295096(-) A-G intron -    22484847 chr2:39296236(-) A-G intron -    22484847 chr2:39296315(-) A-G intron -    22484847 chr2:39301597(-) C-T intron -    22484847 chr2:39306923(-) A-G intron -    22484847 chr2:39306925(-) A-G intron -    22484847 chr2:39314147(-) A-G intron -    22484847 chr2:39314230(-) A-G intron -    22484847 chr2:39314935(-) A-G intron -    22484847 chr2:39317050(-) A-G intron -    22484847 chr2:39317057(-) A-G intron -    22484847 chr2:39317159(-) A-G intron -    22484847 chr2:39317169(-) A-G intron -    22484847 chr2:39317181(-) A-G intron -    22484847 chr2:39317198(-) A-G intron -    22484847 chr2:39317616(-) A-G intron -    22484847 chr2:39317620(-) A-G intron -    22484847 chr2:39317640(-) A-G intron -    22484847 chr2:39317671(-) A-G intron -    22484847 chr2:39317673(-) A-G intron -    22484847 chr2:39317737(-) A-G intron -    22484847 chr2:39317754(-) A-G intron -    22484847 chr2:39317755(-) A-G intron -    22484847 chr2:39318070(-) A-G intron -    22484847 chr2:39318124(-) A-G intron -    22484847 chr2:39318188(-) A-G intron -    22484847 chr2:39318192(-) A-G intron -    22484847 chr2:39318261(-) A-G intron -    22484847 chr2:39323862(-) A-G intron -    22484847 chr2:39324843(-) A-G intron -    22484847 chr2:39324985(-) A-G intron -    22484847 chr2:39325818(-) A-G intron -    22484847 chr2:39325841(-) A-G intron -    22484847 chr2:39325866(-) A-G intron -    22484847 chr2:39325930(-) A-G intron -    22484847 chr2:39325944(-) A-G intron -    22484847 chr2:39326982(-) A-G intron -    22484847 chr2:39327003(-) A-G intron -    22484847 chr2:39327018(-) A-G intron -    22484847 chr2:39327060(-) A-G intron -    22484847 chr2:39327061(-) A-G intron -    22484847 chr2:39327085(-) A-G intron -    22484847 chr2:39327090(-) A-G intron -    22484847 chr2:39327104(-) A-G intron -    22484847 chr2:39327130(-) A-G intron -    22484847 chr2:39327131(-) A-G intron -    22484847 chr2:39327147(-) A-G intron -    22484847 chr2:39327149(-) A-G intron -    22484847 chr2:39327846(-) A-G intron -    22484847 chr2:39327977(-) A-G intron -    22484847 chr2:39328053(-) A-G intron -    22484847 chr2:39328067(-) A-G intron -    22484847 chr2:39332517(-) A-G intron -    22484847 chr2:39332537(-) A-G intron -    22484847 chr2:39332847(-) A-G intron -    22484847 chr2:39332875(-) A-G intron -    22484847 chr2:39333035(-) A-G intron -    22484847 chr2:39333178(-) A-G intron -    22484847 chr2:39333233(-) A-G intron -    22484847 chr2:39333239(-) A-G intron -    22484847 chr2:39333309(-) A-G intron -    22484847 chr2:39333320(-) A-G intron -    22484847 chr2:39335842(-) A-G intron -    22484847 chr2:39336224(-) A-G intron -    22484847 chr2:39336228(-) A-G intron -    22484847 chr2:39336253(-) A-G intron -    22484847 chr2:39336254(-) A-G intron -    22484847 chr2:39338274(-) A-G intron -    22484847 chr2:39338880(-) G-A intron -    22484847 chr2:39338905(-) A-G intron -    22484847 chr2:39339009(-) A-G intron -    22484847 chr2:39339577(-) A-G intron -    22484847 chr2:39339583(-) A-G intron -    22484847 chr2:39339587(-) A-G intron -    22484847 chr2:39339645(-) A-G intron -    22484847 chr2:39339663(-) A-G intron -    22484847 chr2:39339671(-) A-G intron -    22484847 chr2:39339675(-) A-G intron -    22484847 chr2:39339681(-) A-G intron -    22484847 chr2:39339689(-) A-G intron -    22484847 chr2:39339715(-) A-G intron -    22484847 chr2:39340000(-) A-G intron -    22484847 chr2:39340017(-) A-G intron -    22484847 chr2:39340068(-) A-G intron -    22484847 chr2:39340071(-) A-G intron -    22484847 chr2:39340080(-) A-G intron -    22484847 chr2:39340177(-) G-T intron -    22484847 chr2:39340429(-) A-G intron -    22484847 chr2:39340439(-) A-G intron -    22484847 chr2:39340446(-) A-G intron -    22484847 chr2:39340538(-) A-G intron -    22484847 chr2:39340547(-) A-G intron -    22484847 chr2:39341884(-) A-G intron -    22484847 chr2:39341932(-) A-G intron -    22484847 chr2:39341985(-) A-G intron -    22484847 chr2:39341989(-) A-G intron -    22484847 chr2:39342628(-) A-G intron -    22484847 chr2:39342688(-) A-G intron -    22484847 chr2:39342694(-) A-G intron -    22484847 chr2:39342746(-) A-G intron -    22484847 chr2:39342778(-) A-G intron -    22484847 chr2:39342787(-) A-G intron -    22484847 chr2:39342805(-) A-G intron -    22484847 chr2:39342828(-) A-G intron -    22484847 chr2:39342838(-) A-G intron -    22484847 chr2:39343766(-) A-G intron -    22484847 chr2:39343776(-) A-G intron -    22484847 chr2:39343853(-) A-G intron -    22484847 chr2:39343905(-) A-G intron -    22484847 chr2:39343909(-) A-G intron -    22484847 chr2:39343930(-) A-G intron -    22484847 chr2:39344273(-) A-G intron -    22484847 chr2:39344308(-) A-G intron -    22484847 chr2:39344337(-) A-G intron -    22484847 chr2:39344338(-) A-G intron -    22484847 chr2:39344339(-) A-G intron -    22484847 chr2:39344340(-) A-G intron -    22484847 chr2:39344343(-) A-G intron -    22484847 chr2:39344364(-) A-G intron -    22484847 chr2:39344374(-) A-G intron -    22484847 chr2:39344440(-) A-G intron -    22484847 chr2:39344441(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SOS1	chr2:39208729-39208730(-) m6A 3'UTR       27773535 chr2:39210965-39210966(-) m6A 3'UTR       27773535 chr2:39211008-39211009(-) m6A 3'UTR       27773535 chr2:39212165-39212166(-) m6A 3'UTR       24284625//24981863//22608085 chr2:39212213-39212214(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr2:39212275-39212276(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr2:39212389-39212390(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//22608085 chr2:39212476-39212477(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//22608085 chr2:39212557-39212558(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr2:39212563-39212564(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr2:39212634-39212635(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr2:39212711-39212712(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:39212742-39212743(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:39212761-39212762(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr2:39212827-39212828(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr2:39212861-39212862(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr2:39212868-39212869(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr2:39212997-39212998(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr2:39213041-39213042(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr2:39213054-39213055(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085 chr2:39213118-39213119(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr2:39213179-39213180(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr2:39213214-39213215(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085 chr2:39213302-39213303(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:39213312-39213313(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:39213349-39213350(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:39213362-39213363(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr2:39213367-39213368(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr2:39213436-39213437(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr2:39214761-39214762(-) m6A exon//intron       27773535 chr2:39222356-39222357(-) m6A CDS       27773535 chr2:39222392-39222393(-) m6A CDS       27773535 chr2:39222471-39222472(-) m6A CDS       27773535 chr2:39222478-39222479(-) m6A CDS       27773535 chr2:39224084-39224085(-) m6A CDS       27773535 chr2:39224092-39224093(-) m6A CDS       27773535 chr2:39224165-39224166(-) m6A CDS       27773535 chr2:39224539-39224540(-) m6A CDS//exon       24981863 chr2:39234247-39234248(-) m6A CDS//exon       27773535 chr2:39239355-39239356(-) m6A CDS       26404942 chr2:39249744-39249745(-) m6A CDS       24284625//24981863//27773535//22608085 chr2:39249755-39249756(-) m6A CDS       24284625//24981863//27773535//22608085 chr2:39249796-39249797(-) m6A CDS       24284625//24981863//27773535//22608085 chr2:39249964-39249965(-) m6A CDS       27773535//22608085 chr2:39250131-39250132(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085 chr2:39250191-39250192(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:39250200-39250201(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:39250223-39250224(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr2:39250254-39250255(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr2:39250261-39250262(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr2:39250323-39250324(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085 chr2:39250936-39250937(-) m6A exon//intron       24284625//24981863//27773535//22608085 chr2:39250941-39250942(-) m6A exon//intron       24284625//24981863//27773535//22608085 chr2:39251155-39251156(-) m6A CDS       24284625//24981863//27773535//22608085 chr2:39351332-39351333(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SOS1	Chromatin HCC cell line (HepG2)|K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10b
Interactor2: SOS1

Evidence Support:

Strong-Evidence	3'UTR indicator assay
Weak-Evidence	Microarray//PAR-CLIP
Prediction-Evidence	PARalyzer
Support Database	ViRBase

References:

[1]PMID	22100165	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	BC-1 cells//BC-3 cells//BJAB cells	Interactor2 expression	None
Description	We focused this analysis mostly on 3'UTRs of mRNAs encoding proteins with functions of potential relevance to KSHV biology and pathogenesis (Table S11). Thirty-six combinations of 3'UTR indicators and KSHV miRNAs with PAR-CLIP interactions were tested for regulation. Nine of these interactions were independently also predicted by microarray analysis of the BJAB cell pools expressing miR-K1, miR-K4-3p, or miR-K11 described above (i.e. for miR-K1: NMI, RAD21, BCL11A, RFXAP; for miR-K4-3p: TPD52, GRB2, MCC, YWHAB; for miR-K11: WEE1). Targets were representative of the full range of seed match types observed in the libraries (Tables S6 and S11).

[2]PMID	23170179	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	BC-1 cells//BC-3 cells//BJAB cells	Interactor2 expression	None
Description	Here,we explore the similarities and differences in the functions of miRNA targets from the limited number of experimentally validated miRNA targets and the larger number of targets predicted by recent reports using high-throughput sequencing of RNA isolated by crosslinking immunoprecipitation(HITS-CLIP and PAR-CLIP) (Table 2).Table 2 Validated targets from high-throughput studies. Shown are cellular targets identified by photoactivatable ribonucleoside enhanced crosslinking and immunoprecipitation(PAR-CLIP), High-throughput sequencing of RNA isolated by crosslinking immunoprecipitation and microarray(RIP-Chip)techniques. Validation of these targets was done using luciferase reporter assays.