Basic Information:

  VIRBase ID:  

VHID00425276

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-3p:  MIMAT0002179          PAQR4:  NM_001284513     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-3p	PAQR4
miRBase Accession/Entrez ID	MIMAT0002179	124222
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PAQR4	chr16:3019283-3019284(+) m6A 5'UTR       24981863 chr16:3019354-3019355(+) m6A 5'UTR       24209618//24981863 chr16:3019482-3019483(+) m6A 5'UTR//intron       24209618//24981863//22575960 chr16:3019520-3019521(+) m6A 5'UTR//intron       24209618//22575960 chr16:3019639-3019640(+) m6A 5'UTR//intron       24981863 chr16:3019672-3019673(+) m6A 5'UTR//intron       24981863 chr16:3019706-3019707(+) m6A CDS//intron       24981863 chr16:3019818-3019819(+) m6A CDS//intron       24284625 chr16:3021064-3021065(+) m6A 5'UTR//intron       24284625 chr16:3021096-3021097(+) m6A 5'UTR//intron       24284625 chr16:3021125-3021126(+) m6A 5'UTR//intron       24284625 chr16:3021346-3021347(+) m6A CDS//intron       24284625 chr16:3021777-3021778(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3021813-3021814(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3021944-3021945(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022098-3022099(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022189-3022190(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022205-3022206(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022237-3022238(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022248-3022249(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022367-3022368(+) Y 3'UTR       26075521 chr16:3022434-3022435(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022456-3022457(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:3022464-3022465(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:3022479-3022480(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:3022536-3022537(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022572-3022573(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022658-3022659(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr16:3022752-3022753(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr16:3022776-3022777(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr16:3022843-3022844(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr16:3022862-3022863(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr16:3022910-3022911(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr16:3022979-3022980(+) m6A 3'UTR       24284625//24209618//27773535//22575960 chr16:3023128-3023129(+) m6A 3'UTR       24284625//22575960 chr16:3023192-3023193(+) m6A 3'UTR       24284625 chr16:3023235-3023236(+) m6A 3'UTR       24284625//24981863 chr16:3023273-3023274(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr16:3023316-3023317(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr16:3023340-3023341(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr16:3023349-3023350(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr16:3023378-3023379(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr16:3023437-3023438(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr16:3023445-3023446(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr16:3023468-3023469(+) m6A 3'UTR       25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PAQR4	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-3p
Interactor2: PAQR4

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid
Support Database	RepTar//VmiReg