Basic Information:

  VIRBase ID:  

VHID00424829

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-3p:  MIMAT0002179          GATAD1:  NR_052016     

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Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-3p	GATAD1
miRBase Accession/Entrez ID	MIMAT0002179	57798
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CMD2B//ODAG//RG083M05.2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GATAD1	chr7:92087264(+) A-I      3'UTR chr7:92087275(+) A-I      3'UTR chr7:92086358(+) A-I      3'UTR chr7:92086392(+) A-I      3'UTR chr7:92086393(+) A-I      3'UTR chr7:92087290(+) A-I      3'UTR chr7:92087304(+) A-I      3'UTR chr7:92087716(+) A-I      3'UTR chr7:92087270(+) A-I      3'UTR chr7:92086398(+) A-I      3'UTR chr7:92087265(+) A-I      3'UTR chr7:92086476(+) A-I      3'UTR chr7:92087457(+) A-I      3'UTR chr7:92087385(+) A-I      3'UTR chr7:92088442(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GATAD1	chr7:92087374(+) T-C intron -    22484847 chr7:92088440(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GATAD1	chr7:92076863-92076864(+) m6A 5'UTR       24981863//27371828 chr7:92077082-92077083(+) m6A CDS       - chr7:92077106-92077107(+) m1A CDS       26863410 chr7:92083861-92083862(+) Am CDS//exon       - chr7:92085794-92085795(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr7:92085816-92085817(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr7:92085889-92085890(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr7:92085992-92085993(+) m6A 3'UTR//exon       24284625//24981863//22608085 chr7:92086003-92086004(+) m6A 3'UTR//exon       24981863//22608085 chr7:92086462-92086463(+) m6A 3'UTR//exon       - chr7:92086578-92086579(+) m6A 3'UTR       24981863 chr7:92086601-92086602(+) m6A 3'UTR       24981863 chr7:92086698-92086699(+) m6A 3'UTR       24981863 chr7:92086758-92086759(+) m6A 3'UTR       24981863 chr7:92086768-92086769(+) m6A 3'UTR       24981863 chr7:92086784-92086785(+) m6A 3'UTR       24981863 chr7:92086831-92086832(+) m6A 3'UTR       24981863 chr7:92087562-92087563(+) m6A 3'UTR       26404942 chr7:92087573-92087574(+) m6A 3'UTR       26404942 chr7:92087733-92087734(+) m6A 3'UTR       26404942 chr7:92087746-92087747(+) m6A 3'UTR       26404942 chr7:92087760-92087761(+) m6A 3'UTR       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GATAD1	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-3p
Interactor2: GATAD1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep
Support Database	RepTar//VmiReg