Basic Information:

  VIRBase ID:  

VHID00423876

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-3p:  MIMAT0002179          ATRN:  NM_139321     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	kshv-miR-K12-10a-3p	ATRN
miRBase Accession/Entrez ID	MIMAT0002179	8455
Organism	Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DPPT-L//MGCA

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ATRN	chr20:3546058(+) A-I      NonSyn:His->Arg chr20:3566432(+) A-I      intronic chr20:3590309(+) A-I      intronic chr20:3588222(+) A-I      intronic chr20:3542436(+) A-I      intronic chr20:3590298(+) A-I      intronic chr20:3590297(+) A-I      intronic chr20:3583410(+) A-I      intronic chr20:3588246(+) A-I      intronic chr20:3588241(+) A-I      intronic chr20:3583434(+) A-I      intronic chr20:3582766(+) A-I      intronic chr20:3583421(+) A-I      intronic chr20:3583409(+) A-I      intronic chr20:3582801(+) A-I      intronic chr20:3582751(+) A-I      intronic chr20:3582742(+) A-I      intronic chr20:3588234(+) A-I      intronic chr20:3462128(+) A-I      intronic chr20:3459812(+) A-I      intronic chr20:3459661(+) A-I      intronic chr20:3459656(+) A-I      intronic chr20:3459616(+) A-I      intronic chr20:3459597(+) A-I      intronic chr20:3459596(+) A-I      intronic chr20:3456645(+) A-I      intronic chr20:3456633(+) A-I      intronic chr20:3456627(+) A-I      intronic chr20:3456523(+) A-I      intronic chr20:3455496(+) A-I      intronic chr20:3455426(+) A-I      intronic chr20:3455233(+) A-I      intronic chr20:3455176(+) A-I      intronic chr20:3455094(+) A-I      intronic chr20:3455425(+) A-I      intronic chr20:3596348(+) A-I      intronic chr20:3596339(+) A-I      intronic chr20:3596267(+) A-I      intronic chr20:3596258(+) A-I      intronic chr20:3596256(+) A-I      intronic chr20:3596246(+) A-I      intronic chr20:3596234(+) A-I      intronic chr20:3595890(+) A-I      intronic chr20:3595889(+) A-I      intronic chr20:3584266(+) A-I      intronic chr20:3583522(+) A-I      intronic chr20:3583516(+) A-I      intronic chr20:3583450(+) A-I      intronic chr20:3583446(+) A-I      intronic chr20:3583382(+) A-I      intronic chr20:3582781(+) A-I      intronic chr20:3582767(+) A-I      intronic chr20:3555087(+) A-I      intronic chr20:3555067(+) A-I      intronic chr20:3554977(+) A-I      intronic chr20:3554909(+) A-I      intronic chr20:3554594(+) A-I      intronic chr20:3542620(+) A-I      intronic chr20:3542425(+) A-I      intronic chr20:3541927(+) A-I      intronic chr20:3541863(+) A-I      intronic chr20:3541823(+) A-I      intronic chr20:3541805(+) A-I      intronic chr20:3530868(+) A-I      intronic chr20:3530832(+) A-I      intronic chr20:3530828(+) A-I      intronic chr20:3530725(+) A-I      intronic chr20:3516512(+) A-I      intronic chr20:3516407(+) A-I      intronic chr20:3512640(+) A-I      intronic chr20:3509586(+) A-I      intronic chr20:3509585(+) A-I      intronic chr20:3509572(+) A-I      intronic chr20:3509540(+) A-I      intronic chr20:3509539(+) A-I      intronic chr20:3508908(+) A-I      intronic chr20:3508895(+) A-I      intronic chr20:3501379(+) A-I      intronic chr20:3501324(+) A-I      intronic chr20:3501216(+) A-I      intronic chr20:3490385(+) A-I      intronic chr20:3490238(+) A-I      intronic chr20:3490224(+) A-I      intronic chr20:3490167(+) A-I      intronic chr20:3488746(+) A-I      intronic chr20:3488449(+) A-I      intronic chr20:3488432(+) A-I      intronic chr20:3488425(+) A-I      intronic chr20:3488370(+) A-I      intronic chr20:3487937(+) A-I      intronic chr20:3487191(+) A-I      intronic chr20:3487124(+) A-I      intronic chr20:3487110(+) A-I      intronic chr20:3487070(+) A-I      intronic chr20:3474189(+) A-I      intronic chr20:3474141(+) A-I      intronic chr20:3468077(+) A-I      intronic chr20:3468063(+) A-I      intronic chr20:3468060(+) A-I      intronic chr20:3468054(+) A-I      intronic chr20:3468045(+) A-I      intronic chr20:3468019(+) A-I      intronic chr20:3468009(+) A-I      intronic chr20:3464133(+) A-I      intronic chr20:3464033(+) A-I      intronic chr20:3623647(+) A-I      intronic chr20:3596063(+) A-I      intronic chr20:3606664(+) A-I      intronic chr20:3542444(+) A-I      intronic chr20:3515390(+) A-I      intronic chr20:3464175(+) A-I      intronic chr20:3512697(+) A-I      intronic chr20:3591154(+) A-I      intronic chr20:3495382(+) A-I      intronic chr20:3455100(+) A-I      intronic chr20:3595955(+) A-I      intronic chr20:3525868(+) A-I      intronic chr20:3555082(+) A-I      intronic chr20:3542398(+) A-I      intronic chr20:3488624(+) A-I      intronic chr20:3542608(+) A-I      intronic chr20:3455092(+) A-I      intronic chr20:3584157(+) A-I      intronic chr20:3464628(+) A-I      intronic chr20:3584369(+) A-I      intronic chr20:3553309(+) A-I      intronic chr20:3582821(+) A-I      intronic chr20:3464093(+) A-I      intronic chr20:3595894(+) A-I      intronic chr20:3542655(+) A-I      intronic chr20:3595972(+) A-I      intronic chr20:3595929(+) A-I      intronic chr20:3467184(+) A-I      intronic chr20:3624044(+) A-I      intronic chr20:3464178(+) A-I      intronic chr20:3467992(+) A-I      intronic chr20:3596342(+) A-I      intronic chr20:3488814(+) A-I      intronic chr20:3467065(+) A-I      intronic chr20:3455513(+) A-I      intronic chr20:3464713(+) A-I      intronic chr20:3596033(+) A-I      intronic chr20:3466549(+) A-I      intronic chr20:3596386(+) A-I      intronic chr20:3511188(+) A-I      intronic chr20:3542475(+) A-I      intronic chr20:3474007(+) A-I      intronic chr20:3596369(+) A-I      intronic chr20:3455461(+) A-I      intronic chr20:3596041(+) A-I      intronic chr20:3488763(+) A-I      intronic chr20:3592328(+) A-I      intronic chr20:3607538(+) A-I      intronic chr20:3515383(+) A-I      intronic chr20:3473870(+) A-I      intronic chr20:3515515(+) A-I      intronic chr20:3488618(+) A-I      intronic chr20:3515382(+) A-I      intronic chr20:3582791(+) A-I      intronic chr20:3501303(+) A-I      intronic chr20:3501165(+) A-I      intronic chr20:3488740(+) A-I      intronic chr20:3611871(+) A-I      intronic chr20:3456530(+) A-I      intronic chr20:3501168(+) A-I      intronic chr20:3555122(+) A-I      intronic chr20:3591444(+) A-I      intronic chr20:3490280(+) A-I      intronic chr20:3464841(+) A-I      intronic chr20:3606659(+) A-I      intronic chr20:3611799(+) A-I      intronic chr20:3596332(+) A-I      intronic chr20:3595820(+) A-I      intronic chr20:3583560(+) A-I      intronic chr20:3487196(+) A-I      intronic chr20:3464851(+) A-I      intronic chr20:3622140(+) A-I      intronic chr20:3508829(+) A-I      intronic chr20:3464680(+) A-I      intronic chr20:3555147(+) A-I      intronic chr20:3596400(+) A-I      intronic chr20:3487183(+) A-I      intronic chr20:3487975(+) A-I      intronic chr20:3488741(+) A-I      intronic chr20:3592198(+) A-I      intronic chr20:3620135(+) A-I      intronic chr20:3502568(+) A-I      intronic chr20:3541794(+) A-I      intronic chr20:3596368(+) A-I      intronic chr20:3596383(+) A-I      intronic chr20:3487016(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ATRN	chr20:3470923(+) A-I intron -    22327324 chr20:3470926(+) A-I intron -    22327324 chr20:3470959(+) A-I intron -    22327324 chr20:3470962(+) A-I intron -    22327324 chr20:3471212(+) A-I intron -    22327324 chr20:3471400(+) A-I intron -    22327324 chr20:3471452(+) A-I intron -    22327324 chr20:3566488(+) A-I intron -    21960545 chr20:3567640(+) A-I intron -    21960545 chr20:3588124(+) A-I intron -    21960545 chr20:3588314(+) A-I intron -    21960545 chr20:3595647(+) A-I intron -    21960545 chr20:3566512(+) A-G intron -    22484847 chr20:3566527(+) A-G intron -    22484847 chr20:3566528(+) G-A intron -    22484847 chr20:3566534(+) A-G intron -    22484847 chr20:3590324(+) A-G intron -    22484847 chr20:3464625(+) A-G intron -    22484847 chr20:3582738(+) A-G intron -    22484847 chr20:3582791(+) A-G intron -    22484847 chr20:3596369(+) A-G intron -    22484847 chr20:3607533(+) A-G intron -    22484847 chr20:3607538(+) A-G intron -    22484847 chr20:3607563(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ATRN	chr20:3451848-3451849(+) m6A CDS       24209618//24981863 chr20:3596480-3596481(+) m6A CDS//intron       - chr20:3596485-3596486(+) m6A CDS//intron       - chr20:3596502-3596503(+) m6A 3'UTR//intron       - chr20:3596516-3596517(+) m6A 3'UTR//intron       - chr20:3627396-3627397(+) m6A CDS       24284625//25456834//24981863//22608085 chr20:3627450-3627451(+) m6A CDS       24284625//25456834//24981863//22608085 chr20:3627482-3627483(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr20:3627508-3627509(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3627600-3627601(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3627607-3627608(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3627780-3627781(+) m6A 3'UTR       25456834//24981863//26404942//27773535//22608085 chr20:3627812-3627813(+) m6A 3'UTR       25456834//24981863//26404942//27773535//22608085 chr20:3627824-3627825(+) m6A 3'UTR       25456834//24981863//26404942//27773535//22608085 chr20:3627845-3627846(+) m6A 3'UTR       25456834//24981863//26404942//27773535//22608085 chr20:3627871-3627872(+) m6A 3'UTR       25456834//24981863//22608085 chr20:3627895-3627896(+) m6A 3'UTR       25456834//24981863//22608085 chr20:3627911-3627912(+) m6A 3'UTR       24981863//22608085 chr20:3628187-3628188(+) m6A 3'UTR       24981863 chr20:3628263-3628264(+) m6A 3'UTR       24981863 chr20:3628291-3628292(+) m6A 3'UTR       24981863 chr20:3628447-3628448(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3628493-3628494(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3628527-3628528(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr20:3628599-3628600(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:3628652-3628653(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3628697-3628698(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3628726-3628727(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3628746-3628747(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:3628792-3628793(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr20:3628848-3628849(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3628929-3628930(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22608085 chr20:3628969-3628970(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3629086-3629087(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3629120-3629121(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3629128-3629129(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr20:3629178-3629179(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22608085 chr20:3629292-3629293(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr20:3629300-3629301(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr20:3629319-3629320(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr20:3629335-3629336(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr20:3629377-3629378(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr20:3629396-3629397(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr20:3629434-3629435(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr20:3629461-3629462(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr20:3629560-3629561(+) m6A 3'UTR       24284625//24981863 chr20:3630191-3630192(+) m6A 3'UTR       26404942 chr20:3630196-3630197(+) m6A 3'UTR       26404942 chr20:3630585-3630586(+) m6A 3'UTR       - chr20:3630703-3630704(+) m6A 3'UTR       25456834//24981863 chr20:3630710-3630711(+) m6A 3'UTR       25456834//24981863 chr20:3630735-3630736(+) m6A 3'UTR       25456834//24981863 chr20:3630765-3630766(+) m6A 3'UTR       25456834//24981863 chr20:3630772-3630773(+) m6A 3'UTR       25456834//24981863 chr20:3630975-3630976(+) m6A 3'UTR       26404942 chr20:3631037-3631038(+) m6A 3'UTR       26404942 chr20:3631591-3631592(+) m6A 3'UTR       27773535 chr20:3631646-3631647(+) m6A 3'UTR       27773535 chr20:3631654-3631655(+) m6A 3'UTR       27773535 chr20:3631679-3631680(+) m6A 3'UTR       27773535 chr20:3631694-3631695(+) m6A 3'UTR       27773535 chr20:3631706-3631707(+) m6A 3'UTR       27773535 chr20:3631730-3631731(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ATRN	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: kshv-miR-K12-10a-3p
Interactor2: ATRN

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//Rep//Targetscan
Support Database	RepTar//ViRBase//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-3 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6B BC-3 derived 3'UTR clusters with seed matches to expressed miRNAs.