Detail Information

Basic Information:


  VIRBase ID:  

VHID00423724

  Virus:  

Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      kshv-miR-K12-10a-3p:           SP3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol kshv-miR-K12-10a-3p SP3
miRBase
Accession/Entrez ID		 MIMAT0002179 6670
Organism Human gammaherpesvirus 8 (Kaposi's sarcoma herpesvirus, KSHV) Homo sapiens
Category miRNA mRNA
Alias - SPR2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SP3
chr2:174798932(-) A-I      intronic
chr2:174786715(-) A-I      intronic
chr2:174786718(-) A-I      intronic
chr2:174786725(-) A-I      intronic
chr2:174786766(-) A-I      intronic
chr2:174800923(-) A-I      intronic
chr2:174800913(-) A-I      intronic
chr2:174786714(-) A-I      intronic
chr2:174829890(-) A-I      intronic
chr2:174791335(-) A-I      intronic
chr2:174796137(-) A-I      intronic
chr2:174796260(-) A-I      intronic
chr2:174797210(-) A-I      intronic
chr2:174797476(-) A-I      intronic
chr2:174797495(-) A-I      intronic
chr2:174797516(-) A-I      intronic
chr2:174797601(-) A-I      intronic
chr2:174797608(-) A-I      intronic
chr2:174799960(-) A-I      intronic
chr2:174800993(-) A-I      intronic
chr2:174801038(-) A-I      intronic
chr2:174801042(-) A-I      intronic
chr2:174803019(-) A-I      intronic
chr2:174803063(-) A-I      intronic
chr2:174803073(-) A-I      intronic
chr2:174803130(-) A-I      intronic
chr2:174804698(-) A-I      intronic
chr2:174804766(-) A-I      intronic
chr2:174804837(-) A-I      intronic
chr2:174804892(-) A-I      intronic
chr2:174809017(-) A-I      intronic
chr2:174809019(-) A-I      intronic
chr2:174809041(-) A-I      intronic
chr2:174809249(-) A-I      intronic
chr2:174810674(-) A-I      intronic
chr2:174810686(-) A-I      intronic
chr2:174811145(-) A-I      intronic
chr2:174811610(-) A-I      intronic
chr2:174797012(-) A-I      intronic
chr2:174797068(-) A-I      intronic
chr2:174797090(-) A-I      intronic
chr2:174785404(-) A-I      intronic
chr2:174785421(-) A-I      intronic
chr2:174786154(-) A-I      intronic
chr2:174786376(-) A-I      intronic
chr2:174791330(-) A-I      intronic
chr2:174800874(-) A-I      intronic
chr2:174797093(-) A-I      intronic
chr2:174792116(-) A-I      intronic
chr2:174801006(-) A-I      intronic
chr2:174785430(-) A-I      intronic
chr2:174804836(-) A-I      intronic
chr2:174803061(-) A-I      intronic
chr2:174785457(-) A-I      intronic
chr2:174807172(-) A-I      intronic
chr2:174792278(-) A-I      intronic
chr2:174796953(-) A-I      intronic
chr2:174808292(-) A-I      intronic
chr2:174786172(-) A-I      intronic
chr2:174803151(-) A-I      intronic
chr2:174800997(-) A-I      intronic
chr2:174786160(-) A-I      intronic
chr2:174809600(-) A-I      intronic
chr2:174796343(-) A-I      intronic
chr2:174798906(-) A-I      intronic
chr2:174800848(-) A-I      intronic
chr2:174807166(-) A-I      intronic
chr2:174804832(-) A-I      intronic
chr2:174797102(-) A-I      intronic
chr2:174786349(-) A-I      intronic
chr2:174798704(-) A-I      intronic
chr2:174791309(-) A-I      intronic
chr2:174798780(-) A-I      intronic
chr2:174786397(-) A-I      intronic
chr2:174808260(-) A-I      intronic
chr2:174824288(-) A-I      intronic
chr2:174811528(-) A-I      intronic
chr2:174796000(-) A-I      intronic
chr2:174806153(-) A-I      intronic
chr2:174798911(-) A-I      intronic
chr2:174797638(-) A-I      intronic
chr2:174797657(-) A-I      intronic
chr2:174818327(-) A-I      intronic
chr2:174811588(-) A-I      intronic
chr2:174799957(-) A-I      intronic
chr2:174804345(-) A-I      intronic
chr2:174796236(-) A-I      intronic
chr2:174811710(-) A-I      intronic
chr2:174786173(-) A-I      intronic
chr2:174796349(-) A-I      intronic
chr2:174800877(-) A-I      intronic
chr2:174786319(-) A-I      intronic
chr2:174796012(-) A-I      intronic
chr2:174800885(-) A-I      intronic
chr2:174801026(-) A-I      intronic
chr2:174797620(-) A-I      intronic
chr2:174809627(-) A-I      intronic
chr2:174785402(-) A-I      intronic
chr2:174797713(-) A-I      intronic
chr2:174804870(-) A-I      intronic
chr2:174791324(-) A-I      intronic
chr2:174785586(-) A-I      intronic
chr2:174797200(-) A-I      intronic
chr2:174806314(-) A-I      intronic
chr2:174808348(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SP3
chr2:174797713(-) A-I intron -    21960545
chr2:174786717(-) A-G intron -    22484847
chr2:174786748(-) A-G intron -    22484847
chr2:174787972(-) A-C intron -    22484847
chr2:174776814(-) G-A intron -    22484847
chr2:174785430(-) A-G intron -    22484847
chr2:174785457(-) A-G intron -    22484847
chr2:174786172(-) A-G intron -    22484847
chr2:174786319(-) A-G intron -    22484847
chr2:174786349(-) A-G intron -    22484847
chr2:174791324(-) A-G intron -    22484847
chr2:174792278(-) A-G intron -    22484847
chr2:174796343(-) A-G intron -    22484847
chr2:174796349(-) A-G intron -    22484847
chr2:174797100(-) A-G intron -    22484847
chr2:174797200(-) A-G intron -    22484847
chr2:174797553(-) A-G intron -    22484847
chr2:174797620(-) A-G intron -    22484847
chr2:174797638(-) A-G intron -    22484847
chr2:174799957(-) A-G intron -    22484847
chr2:174800848(-) A-G intron -    22484847
chr2:174800877(-) A-G intron -    22484847
chr2:174800885(-) A-G intron -    22484847
chr2:174800891(-) A-G intron -    22484847
chr2:174801006(-) A-G intron -    22484847
chr2:174803187(-) G-T intron -    22484847
chr2:174804345(-) A-G intron -    22484847
chr2:174804836(-) A-G intron -    22484847
chr2:174808258(-) A-G intron -    22484847
chr2:174808260(-) A-G intron -    22484847
chr2:174809188(-) A-G intron -    22484847
chr2:174809189(-) A-G intron -    22484847
chr2:174809600(-) A-G intron -    22484847
chr2:174809627(-) A-G intron -    22484847
chr2:174809634(-) A-G intron -    22484847
chr2:174809673(-) A-G intron -    22484847
chr2:174811528(-) A-G intron -    22484847
chr2:174811646(-) A-G intron -    22484847
chr2:174811706(-) A-G intron -    22484847
chr2:174811710(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SP3
chr2:174774679-174774680(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr2:174774766-174774767(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174774817-174774818(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174774910-174774911(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr2:174774920-174774921(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr2:174777806-174777807(-) m6A CDS//exon       24209618//24981863//27773535//27371828//22608085
chr2:174777923-174777924(-) m6A CDS//exon       24209618//24981863//27773535//27371828//22608085
chr2:174783370-174783371(-) m6A CDS       24981863//27773535
chr2:174783395-174783396(-) m6A CDS       24981863//27773535
chr2:174783490-174783491(-) m6A CDS       24209618//24981863//27773535//22608085
chr2:174819659-174819660(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr2:174819672-174819673(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr2:174819759-174819760(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174819821-174819822(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174819862-174819863(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174819879-174819880(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174819900-174819901(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174819981-174819982(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr2:174820098-174820099(-) m6A CDS       24209618//24981863//27773535//22608085
chr2:174820184-174820185(-) m6A CDS       24209618//24981863//27773535//22608085
chr2:174820272-174820273(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174820305-174820306(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174820319-174820320(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174820339-174820340(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174820346-174820347(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174820357-174820358(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174820386-174820387(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174820405-174820406(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174820491-174820492(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:174820548-174820549(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:174820584-174820585(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr2:174820602-174820603(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr2:174820919-174820920(-) m6A CDS//exon       27773535//27371828
chr2:174828092-174828093(-) m6A exon//intron       24981863//27773536
chr2:174828609-174828610(-) m6A 5'UTR//CDS//exon//intron       24209618//24981863//27371828//27773536
chr2:174828629-174828630(-) m6A 5'UTR//intron       24209618//24981863//27371828//27773536
chr2:174828702-174828703(-) m6A 5'UTR//intron       24209618//27371828//27773536
chr2:174828769-174828770(-) m6A 5'UTR//intron       27371828//27773536
chr2:174828824-174828825(-) m6A 5'UTR//intron       24209618//27371828//27773536
chr2:174829261-174829262(-) m6A CDS//exon//intron       24981863//27371828
chr2:174829905-174829906(-) m6A 5'UTR//intron       24981863//27371828
chr2:174830013-174830014(-) m6A 5'UTR//exon       24981863
chr2:174830175-174830176(-) m6A 5'UTR       25456834//24981863//27371828//27773536
chr2:174830187-174830188(-) m6A 5'UTR       25456834//24981863//27371828//27773536
chr2:174830195-174830196(-) m6A 5'UTR       25456834//24981863//27371828//27773536
chr2:174830218-174830219(-) m6A 5'UTR       25456834//24981863//27371828//27773536
chr2:174830269-174830270(-) m6A 5'UTR       25456834//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SP3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: kshv-miR-K12-10a-3p
Interactor2: SP3

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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