Basic Information:

  VIRBase ID:  

VHID00422291

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART22:  MIMAT0010132          HNRNPA3:  NM_001330250     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART22	HNRNPA3
miRBase Accession/Entrez ID	MIMAT0010132	220988
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	2610510D13Rik//D10S102//FBRNP//HNRPA3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HNRNPA3	chr2:178082325(+) A-I      intronic chr2:178082291(+) A-I      intronic chr2:178082277(+) A-I      intronic chr2:178087695(+) A-I      3'UTR chr2:178087696(+) A-I      3'UTR chr2:178087699(+) A-I      3'UTR chr2:178082269(+) A-I      intronic chr2:178087935(+) A-I      3'UTR chr2:178087924(+) A-I      3'UTR chr2:178087917(+) A-I      3'UTR chr2:178087916(+) A-I      3'UTR chr2:178087912(+) A-I      3'UTR chr2:178087682(+) A-I      3'UTR chr2:178087894(+) A-I      3'UTR chr2:178087878(+) A-I      3'UTR chr2:178087739(+) A-I      3'UTR chr2:178087738(+) A-I      3'UTR chr2:178087718(+) A-I      3'UTR chr2:178087679(+) A-I      3'UTR chr2:178079978(+) A-I      intronic chr2:178087717(+) A-I      3'UTR chr2:178087709(+) A-I      3'UTR chr2:178087701(+) A-I      3'UTR chr2:178082282(+) A-I      intronic chr2:178079475(+) A-I      intronic chr2:178079338(+) A-I      intronic chr2:178079892(+) A-I      intronic chr2:178079962(+) A-I      intronic chr2:178079910(+) A-I      intronic chr2:178079468(+) A-I      intronic chr2:178082259(+) A-I      intronic chr2:178079269(+) A-I      intronic chr2:178079376(+) A-I      intronic chr2:178087379(+) A-I      3'UTR chr2:178087411(+) A-I      3'UTR chr2:178087352(+) A-I      3'UTR chr2:178079346(+) A-I      intronic chr2:178080099(+) A-I      intronic chr2:178079895(+) A-I      intronic chr2:178079911(+) A-I      intronic chr2:178082250(+) A-I      intronic chr2:178079964(+) A-I      intronic chr2:178079402(+) A-I      intronic chr2:178080032(+) A-I      intronic chr2:178079867(+) A-I      intronic chr2:178080006(+) A-I      intronic chr2:178079952(+) A-I      intronic chr2:178079905(+) A-I      intronic chr2:178079887(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	HNRNPA3	chr2:178079268(+) A-G intron -    22484847 chr2:178079269(+) A-G intron -    22484847 chr2:178079289(+) C-T intron -    22484847 chr2:178079376(+) A-G intron -    22484847 chr2:178079468(+) A-G intron -    22484847 chr2:178079905(+) A-G intron -    22484847 chr2:178079952(+) A-G intron -    22484847 chr2:178079964(+) A-G intron -    22484847 chr2:178082980(+) T-C intron -    22484847 chr2:178087277(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HNRNPA3	chr2:178077426-178077427(+) m6A 5'UTR       24981863 chr2:178077494-178077495(+) m6A 5'UTR       25456834//24981863 chr2:178077538-178077539(+) m6A CDS//intron       25456834//24981863//26404942 chr2:178080283-178080284(+) m6A CDS       24981863//26404942 chr2:178080301-178080302(+) m6A CDS       24981863 chr2:178080329-178080330(+) m6A CDS       24981863//27773535 chr2:178080352-178080353(+) m6A CDS       24981863//27773535 chr2:178080487-178080488(+) m6A CDS       24981863 chr2:178080495-178080496(+) m6A CDS       - chr2:178080599-178080600(+) m6A CDS       27773535 chr2:178080793-178080794(+) m6A CDS       24981863//27773535 chr2:178080822-178080823(+) m6A CDS       24981863//27773535 chr2:178080841-178080842(+) m6A CDS       24981863//27773535 chr2:178081288-178081289(+) m6A CDS       24209618//24981863//27773535 chr2:178081445-178081446(+) m6A CDS       24209618//24981863//27773535//22575960 chr2:178081484-178081485(+) m6A CDS//intron       24209618//24981863//27773535//22575960 chr2:178082490-178082491(+) m6A CDS//intron       24209618//24981863//27773535 chr2:178082504-178082505(+) m6A CDS//intron       24209618//24981863//27773535 chr2:178083785-178083786(+) m6A CDS       24209618//24981863//27773535 chr2:178083813-178083814(+) m6A CDS       24209618//24981863//27773535 chr2:178083834-178083835(+) m6A CDS//exon       24209618//24981863//27773535 chr2:178083864-178083865(+) m1A CDS//exon       26863196 chr2:178084029-178084030(+) m6A 3'UTR//exon       24209618//24981863//27773535//22575960 chr2:178084088-178084089(+) m6A 3'UTR//exon//intron       24209618//24981863//27773535//22575960 chr2:178084197-178084198(+) m6A 3'UTR//exon       24209618//24981863//27773535//22608085 chr2:178084223-178084224(+) m6A 3'UTR//exon       24209618//24981863//27773535//22608085 chr2:178084285-178084286(+) m6A 3'UTR//exon       24209618//24981863//22608085 chr2:178084292-178084293(+) m6A 3'UTR//exon       24209618//24981863//22608085 chr2:178084308-178084309(+) m6A 3'UTR//exon       24981863 chr2:178084685-178084686(+) Y 3'UTR       26075521 chr2:178085012-178085013(+) Y 3'UTR       26075521 chr2:178085856-178085857(+) m6A 3'UTR       27773535 chr2:178085873-178085874(+) m6A 3'UTR       27773535 chr2:178085979-178085980(+) m6A 3'UTR       27773535 chr2:178086003-178086004(+) m6A 3'UTR       27773535 chr2:178086324-178086325(+) m6A 3'UTR       24284625//24981863//22608085 chr2:178086375-178086376(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085 chr2:178086415-178086416(+) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960//22608085 chr2:178086425-178086426(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:178086430-178086431(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:178086454-178086455(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:178086630-178086631(+) m6A 3'UTR       27773535//22608085 chr2:178086676-178086677(+) m6A 3'UTR       27773535//22608085 chr2:178087189-178087190(+) m6A 3'UTR       26404942 chr2:178087222-178087223(+) m6A 3'UTR       26404942 chr2:178087236-178087237(+) m6A 3'UTR       26404942 chr2:178087831-178087832(+) m6A 3'UTR       27773535 chr2:178087923-178087924(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HNRNPA3	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART22
Interactor2: HNRNPA3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg