Basic Information:

  VIRBase ID:  

VHID00421701

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART22:  MIMAT0010132          PIGM:  NM_145167     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART22	PIGM
miRBase Accession/Entrez ID	MIMAT0010132	93183
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GPI-MT-I

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PIGM	chr1:159999689(-) A-I      3'UTR chr1:159999263(-) A-I      3'UTR chr1:159999419(-) A-I      3'UTR chr1:159999790(-) A-I      3'UTR chr1:159999688(-) A-I      3'UTR chr1:159999328(-) A-I      3'UTR chr1:159999654(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PIGM	chr1:159999790(-) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PIGM	chr1:159997908-159997909(-) Y 3'UTR       26075521 chr1:159999282-159999283(-) m6A 3'UTR       24981863 chr1:159999379-159999380(-) m6A 3'UTR       24981863//22608085 chr1:159999402-159999403(-) m6A 3'UTR       24981863//27773535//22608085 chr1:159999448-159999449(-) m6A 3'UTR       24981863//27773535//22608085 chr1:159999489-159999490(-) m6A 3'UTR       24981863//27773535//22608085 chr1:159999559-159999560(-) m6A 3'UTR       27773535 chr1:159999946-159999947(-) m6A 3'UTR       24981863//27773535//22608085 chr1:159999977-159999978(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:159999993-159999994(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:160000042-160000043(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:160000057-160000058(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:160000095-160000096(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:160000130-160000131(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:160000172-160000173(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr1:160000185-160000186(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr1:160000204-160000205(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr1:160000287-160000288(-) m6A CDS       24209618//24981863//27773535//22608085 chr1:160000378-160000379(-) m6A CDS       - chr1:160000594-160000595(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:160000764-160000765(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:160000824-160000825(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:160001037-160001038(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:160001089-160001090(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:160001383-160001384(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:160001405-160001406(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr1:160001410-160001411(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085 chr1:160001491-160001492(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr1:160001598-160001599(-) m6A 5'UTR       24284625//24209618//24981863//27371828//22608085 chr1:160001705-160001706(-) m6A 5'UTR       24284625//24981863//22608085 chr1:160001722-160001723(-) m6A 5'UTR       24284625//24981863//22608085 chr1:160001770-160001771(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PIGM	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART22
Interactor2: PIGM

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg