Basic Information:

  VIRBase ID:  

VHID00421592

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART22:  MIMAT0010132          TNKS1BP1:  NM_033396     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART22	TNKS1BP1
miRBase Accession/Entrez ID	MIMAT0010132	85456
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	TAB182

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TNKS1BP1	chr11:57067138-57067139(-) m6A 3'UTR//exon       - chr11:57067162-57067163(-) m6A 3'UTR//exon       - chr11:57067218-57067219(-) m6A 3'UTR//exon       24284625 chr11:57067393-57067394(-) m6A 3'UTR//exon       24284625//27773535 chr11:57068034-57068035(-) m6A CDS//exon//intron       24284625//27773536 chr11:57068095-57068096(-) m6A exon//intron       24284625//27773536 chr11:57068404-57068405(-) m6A CDS//exon//intron       24284625//27371828//27773536 chr11:57069351-57069352(-) m6A CDS//exon//intron       24284625//27371828//27773536 chr11:57069367-57069368(-) m6A CDS//exon//intron       24284625//27371828//27773536 chr11:57069555-57069556(-) m6A CDS//exon//intron       24284625//27773536 chr11:57069579-57069580(-) m6A CDS//exon//intron       24284625//27773536 chr11:57069582-57069583(-) Cm CDS//exon//intron       - chr11:57069948-57069949(-) m6A CDS//exon//intron       24284625//27371828//27773536 chr11:57069997-57069998(-) m6A CDS//exon//intron       24284625//27371828//27773536 chr11:57070063-57070064(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536 chr11:57070110-57070111(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536 chr11:57070761-57070762(-) m6A exon//intron       27773535 chr11:57070915-57070916(-) m6A exon//intron       - chr11:57070924-57070925(-) m6A exon//intron       - chr11:57075896-57075897(-) m6A CDS//intron       24284625//24209618//25456834//27773535//27371828//27773536 chr11:57075910-57075911(-) m6A CDS//intron       24284625//24209618//25456834//27773535//27371828//27773536 chr11:57075959-57075960(-) m6A CDS//intron       24284625//24209618//25456834//27773535//27371828//27773536 chr11:57075974-57075975(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960 chr11:57076009-57076010(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:57076144-57076145(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076151-57076152(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076156-57076157(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076204-57076205(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076255-57076256(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076318-57076319(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076340-57076341(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076345-57076346(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076353-57076354(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076412-57076413(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076502-57076503(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:57076507-57076508(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:57076573-57076574(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:57076579-57076580(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:57076614-57076615(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:57076678-57076679(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076700-57076701(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076705-57076706(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076724-57076725(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57076849-57076850(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr11:57076861-57076862(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr11:57076995-57076996(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077035-57077036(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077053-57077054(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077164-57077165(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:57077183-57077184(-) m1A 3'UTR//CDS       26863196 chr11:57077244-57077245(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077263-57077264(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077279-57077280(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077305-57077306(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077333-57077334(-) Gm 3'UTR//CDS//exon       - chr11:57077337-57077338(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077404-57077405(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:57077446-57077447(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr11:57077530-57077531(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077593-57077594(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077601-57077602(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077656-57077657(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077719-57077720(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077761-57077762(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077861-57077862(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077866-57077867(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077887-57077888(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077920-57077921(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57077974-57077975(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:57078027-57078028(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27773536 chr11:57078927-57078928(-) m6A exon//intron       24284625//25456834//24981863//27371828//27773536 chr11:57080035-57080036(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr11:57080154-57080155(-) Y 3'UTR//CDS       26075521 chr11:57080161-57080162(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57080174-57080175(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57080189-57080190(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57080238-57080239(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:57080367-57080368(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57080683-57080684(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr11:57080726-57080727(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr11:57080845-57080846(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr11:57081063-57081064(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr11:57081197-57081198(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960 chr11:57085328-57085329(-) m6A 3'UTR//CDS       24284625 chr11:57087565-57087566(-) m6A CDS       24284625 chr11:57087679-57087680(-) m6A CDS       24284625//27773536 chr11:57087931-57087932(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57088022-57088023(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr11:57088035-57088036(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr11:57088112-57088113(-) m6A CDS       24284625//24209618//25456834//27371828//27773536//22575960//22608085 chr11:57088151-57088152(-) m6A CDS       24284625//24209618//27773535//27773536//22575960 chr11:57088169-57088170(-) m6A CDS       24284625//24209618//27773535//27773536//22575960 chr11:57089477-57089478(-) m6A 5'UTR//intron       24284625//24209618//27773536 chr11:57089492-57089493(-) m6A 5'UTR//intron       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TNKS1BP1	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART22
Interactor2: TNKS1BP1

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//Rep//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.