Detail Information

Basic Information:


  VIRBase ID:  

VHID00419956

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART22:           GMEB2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART22 GMEB2
miRBase
Accession/Entrez ID		 MIMAT0010132 26205
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - GMEB-2//P79PIF//PIF79

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GMEB2
chr20:62226230(-) A-I      intronic
chr20:62231493(-) A-I      intronic
chr20:62231528(-) A-I      intronic
chr20:62228196(-) A-I      intronic
chr20:62228159(-) A-I      intronic
chr20:62226226(-) A-I      intronic
chr20:62231524(-) A-I      intronic
chr20:62257089(-) A-I      intronic
chr20:62226213(-) A-I      intronic
chr20:62226198(-) A-I      intronic
chr20:62257130(-) A-I      intronic
chr20:62226194(-) A-I      intronic
chr20:62225249(-) A-I      intronic
chr20:62225261(-) A-I      intronic
chr20:62237200(-) A-I      intronic
chr20:62234916(-) A-I      intronic
chr20:62234899(-) A-I      intronic
chr20:62231989(-) A-I      intronic
chr20:62231534(-) A-I      intronic
chr20:62225116(-) A-I      intronic
chr20:62257129(-) A-I      intronic
chr20:62257126(-) A-I      intronic
chr20:62225235(-) A-I      intronic
chr20:62257047(-) A-I      intronic
chr20:62257043(-) A-I      intronic
chr20:62256981(-) A-I      intronic
chr20:62256801(-) A-I      intronic
chr20:62256798(-) A-I      intronic
chr20:62256348(-) A-I      intronic
chr20:62231501(-) A-I      intronic
chr20:62256264(-) A-I      intronic
chr20:62256236(-) A-I      intronic
chr20:62256234(-) A-I      intronic
chr20:62255068(-) A-I      intronic
chr20:62256198(-) A-I      intronic
chr20:62256171(-) A-I      intronic
chr20:62256331(-) A-I      intronic
chr20:62248442(-) A-I      intronic
chr20:62247711(-) A-I      intronic
chr20:62256980(-) A-I      intronic
chr20:62247562(-) A-I      intronic
chr20:62237872(-) A-I      intronic
chr20:62237861(-) A-I      intronic
chr20:62256096(-) A-I      intronic
chr20:62228108(-) A-I      intronic
chr20:62226367(-) A-I      intronic
chr20:62247737(-) A-I      intronic
chr20:62255341(-) A-I      intronic
chr20:62254966(-) A-I      intronic
chr20:62225205(-) A-I      intronic
chr20:62236516(-) A-I      intronic
chr20:62245144(-) A-I      intronic
chr20:62231462(-) A-I      intronic
chr20:62255023(-) A-I      intronic
chr20:62255674(-) A-I      intronic
chr20:62231988(-) A-I      intronic
chr20:62225140(-) A-I      intronic
chr20:62231492(-) A-I      intronic
chr20:62255150(-) A-I      intronic
chr20:62231879(-) A-I      intronic
chr20:62252847(-) A-I      intronic
chr20:62244453(-) A-I      intronic
chr20:62232008(-) A-I      intronic
chr20:62254985(-) A-I      intronic
chr20:62255208(-) A-I      intronic
chr20:62242916(-) A-I      intronic
chr20:62228682(-) A-I      intronic
chr20:62257119(-) A-I      intronic
chr20:62232999(-) A-I      intronic
chr20:62225273(-) A-I      intronic
chr20:62228796(-) A-I      intronic
chr20:62237901(-) A-I      intronic
chr20:62255297(-) A-I      intronic
chr20:62225368(-) A-I      intronic
chr20:62231914(-) A-I      intronic
chr20:62226295(-) A-I      intronic
chr20:62255283(-) A-I      intronic
chr20:62228630(-) A-I      intronic
chr20:62226279(-) A-I      intronic
chr20:62244994(-) A-I      intronic
chr20:62231606(-) A-I      intronic
chr20:62231571(-) A-I      intronic
chr20:62228699(-) A-I      intronic
chr20:62226355(-) A-I      intronic
chr20:62233006(-) A-I      intronic
chr20:62225290(-) A-I      intronic
chr20:62228154(-) A-I      intronic
chr20:62256354(-) A-I      intronic
chr20:62237186(-) A-I      intronic
chr20:62254945(-) A-I      intronic
chr20:62231468(-) A-I      intronic
chr20:62225251(-) A-I      intronic
chr20:62225243(-) A-I      intronic
chr20:62225207(-) A-I      intronic
chr20:62226360(-) A-I      intronic
chr20:62231949(-) A-I      intronic
chr20:62228716(-) A-I      intronic
chr20:62247688(-) A-I      intronic
chr20:62226303(-) A-I      intronic
chr20:62247673(-) A-I      intronic
chr20:62231485(-) A-I      intronic
chr20:62231506(-) A-I      intronic
chr20:62247685(-) A-I      intronic
chr20:62257133(-) A-I      intronic
chr20:62254988(-) A-I      intronic
chr20:62228776(-) A-I      intronic
chr20:62228784(-) A-I      intronic
chr20:62226240(-) A-I      intronic
chr20:62256667(-) A-I      intronic
chr20:62225371(-) A-I      intronic
chr20:62247552(-) A-I      intronic
chr20:62242882(-) A-I      intronic
chr20:62225212(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GMEB2
chr20:62228682(-) A-I intron -    22327324
chr20:62228682(-) A-G intron -    22484847
chr20:62228743(-) A-G intron -    22484847
chr20:62228776(-) A-G intron -    22484847
chr20:62255674(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GMEB2
chr20:62219074-62219075(-) m6A 3'UTR       25456834//27773535
chr20:62219150-62219151(-) m6A 3'UTR       24284625//25456834//27773535
chr20:62219171-62219172(-) m6A 3'UTR       24284625//25456834//27773535
chr20:62219218-62219219(-) m6A 3'UTR       24284625//25456834//27773535
chr20:62219557-62219558(-) m6A 3'UTR       27773535
chr20:62219568-62219569(-) m6A 3'UTR       27773535
chr20:62219609-62219610(-) m6A 3'UTR       27773535
chr20:62219682-62219683(-) m6A 3'UTR       -
chr20:62219716-62219717(-) m6A 3'UTR       -
chr20:62219980-62219981(-) m6A 3'UTR       24284625//27371828
chr20:62220013-62220014(-) m6A 3'UTR       24284625//27371828
chr20:62220127-62220128(-) m6A 3'UTR       24284625//27371828//27773536
chr20:62220228-62220229(-) m6A 3'UTR       27371828//27773536
chr20:62220241-62220242(-) m6A 3'UTR       27371828//27773536
chr20:62220253-62220254(-) m6A 3'UTR       27773536
chr20:62221104-62221105(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr20:62221270-62221271(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr20:62221275-62221276(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr20:62221300-62221301(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr20:62221322-62221323(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr20:62221411-62221412(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr20:62221457-62221458(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr20:62221933-62221934(-) m6A CDS       24284625//25456834//27371828//27773536
chr20:62223382-62223383(-) m6A CDS       27371828//27773536
chr20:62223409-62223410(-) m6A CDS       27371828//27773536
chr20:62223440-62223441(-) m1A CDS       26863196
chr20:62223451-62223452(-) m6A CDS       27773536
chr20:62224378-62224379(-) m6A CDS       24284625//27371828
chr20:62224392-62224393(-) m6A CDS       24284625//27371828
chr20:62224402-62224403(-) m6A CDS       24284625//27371828
chr20:62227093-62227094(-) m6A CDS       24284625//27773535
chr20:62227098-62227099(-) m6A CDS       24284625
chr20:62227108-62227109(-) m6A CDS       24284625
chr20:62234381-62234382(-) m6A CDS       24284625
chr20:62234420-62234421(-) m6A CDS       24284625
chr20:62236164-62236165(-) m6A CDS       24284625//27773535
chr20:62250653-62250654(-) m6A CDS       24284625//27773535
chr20:62250691-62250692(-) m6A CDS       24284625
chr20:62250788-62250789(-) m6A 5'UTR       24284625
chr20:62250798-62250799(-) m6A 5'UTR       24284625
chr20:62250805-62250806(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GMEB2
Chromatin K562 cells     -
Exosome Blood     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART22
Interactor2: GMEB2

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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