Basic Information:

  VIRBase ID:  

VHID00419883

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART22:  MIMAT0010132          THUMPD3:  NM_015453     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART22	THUMPD3
miRBase Accession/Entrez ID	MIMAT0010132	25917
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	THUMPD3	chr3:9409965(+) A-I      intronic chr3:9412208(+) A-I      intronic chr3:9412222(+) A-I      intronic chr3:9412232(+) A-I      intronic chr3:9412241(+) A-I      intronic chr3:9414219(+) A-I      intronic chr3:9414170(+) A-I      intronic chr3:9413701(+) A-I      intronic chr3:9426638(+) A-I      3'UTR chr3:9426588(+) A-I      3'UTR chr3:9426592(+) A-I      3'UTR chr3:9426598(+) A-I      3'UTR chr3:9414179(+) A-I      intronic chr3:9413640(+) A-I      intronic chr3:9413630(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	THUMPD3	chr3:9404916-9404917(+) m6A 5'UTR//intron       27773536 chr3:9405245-9405246(+) m6A 5'UTR//intron       24981863 chr3:9406795-9406796(+) m6A CDS       27773535 chr3:9406807-9406808(+) m6A CDS       27773535 chr3:9408659-9408660(+) m6A CDS       27773535 chr3:9412768-9412769(+) m6A CDS       24981863//27773535//22608085 chr3:9412781-9412782(+) m6A CDS       24981863//27773535//22608085 chr3:9412795-9412796(+) m6A CDS       24981863//27773535//22608085 chr3:9412895-9412896(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr3:9413046-9413047(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:9413070-9413071(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:9413123-9413124(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr3:9416209-9416210(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr3:9426329-9426330(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:9426348-9426349(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:9426425-9426426(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:9426453-9426454(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:9426474-9426475(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:9426548-9426549(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr3:9426959-9426960(+) m6A 3'UTR       27773535 chr3:9427303-9427304(+) m6A 3'UTR       27773535 chr3:9427346-9427347(+) m6A 3'UTR       27773535 chr3:9427354-9427355(+) m6A 3'UTR       27773535 chr3:9427409-9427410(+) m6A 3'UTR       27773535 chr3:9427414-9427415(+) m6A 3'UTR       27773535 chr3:9427420-9427421(+) m6A 3'UTR       27773535 chr3:9427490-9427491(+) m6A 3'UTR       24981863//27773535 chr3:9427612-9427613(+) m6A 3'UTR       24981863//27773535 chr3:9427641-9427642(+) m6A 3'UTR       27773535 chr3:9427976-9427977(+) m6A 3'UTR       - chr3:9427985-9427986(+) m6A 3'UTR       - chr3:9428009-9428010(+) m6A 3'UTR       - chr3:9428025-9428026(+) m6A 3'UTR       - chr3:9428423-9428424(+) m6A 3'UTR       27773535 chr3:9428467-9428468(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	THUMPD3	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART22
Interactor2: THUMPD3

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg