Basic Information:

  VIRBase ID:  

VHID00419612

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART22:  MIMAT0010132          SMG1:  NM_015092     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART22	SMG1
miRBase Accession/Entrez ID	MIMAT0010132	23049
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	61E3.4//ATX//LIP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SMG1	chr16:18865058(-) A-I      NonSyn:Ile->Val chr16:18865039(-) A-I      NonSyn:Gln->Arg chr16:18865060(-) A-I      NonSyn:Glu->Gly chr16:18865064(-) A-I      NonSyn:Lys->Glu chr16:18886791(-) A-I      intronic chr16:18890216(-) A-I      intronic chr16:18884219(-) A-I      intronic chr16:18884284(-) A-I      intronic chr16:18831458(-) A-I      intronic chr16:18884608(-) A-I      intronic chr16:18831484(-) A-I      intronic chr16:18884609(-) A-I      intronic chr16:18931313(-) A-I      intronic chr16:18930913(-) A-I      intronic chr16:18930788(-) A-I      intronic chr16:18930690(-) A-I      intronic chr16:18927223(-) A-I      intronic chr16:18926584(-) A-I      intronic chr16:18926576(-) A-I      intronic chr16:18926574(-) A-I      intronic chr16:18926432(-) A-I      intronic chr16:18925407(-) A-I      intronic chr16:18925406(-) A-I      intronic chr16:18925361(-) A-I      intronic chr16:18925317(-) A-I      intronic chr16:18922747(-) A-I      intronic chr16:18922740(-) A-I      intronic chr16:18922708(-) A-I      intronic chr16:18917116(-) A-I      intronic chr16:18917085(-) A-I      intronic chr16:18917071(-) A-I      intronic chr16:18885593(-) A-I      intronic chr16:18884737(-) A-I      intronic chr16:18884717(-) A-I      intronic chr16:18884712(-) A-I      intronic chr16:18884471(-) A-I      intronic chr16:18884438(-) A-I      intronic chr16:18884414(-) A-I      intronic chr16:18884413(-) A-I      intronic chr16:18916435(-) A-I      intronic chr16:18916379(-) A-I      intronic chr16:18916319(-) A-I      intronic chr16:18929999(-) A-I      intronic chr16:18885598(-) A-I      intronic chr16:18885625(-) A-I      intronic chr16:18885637(-) A-I      intronic chr16:18831322(-) A-I      intronic chr16:18885643(-) A-I      intronic chr16:18885734(-) A-I      intronic chr16:18885983(-) A-I      intronic chr16:18889708(-) A-I      intronic chr16:18890087(-) A-I      intronic chr16:18890142(-) A-I      intronic chr16:18890184(-) A-I      intronic chr16:18890213(-) A-I      intronic chr16:18890605(-) A-I      intronic chr16:18890709(-) A-I      intronic chr16:18899440(-) A-I      intronic chr16:18899833(-) A-I      intronic chr16:18899905(-) A-I      intronic chr16:18899918(-) A-I      intronic chr16:18899938(-) A-I      intronic chr16:18900007(-) A-I      intronic chr16:18901920(-) A-I      intronic chr16:18901970(-) A-I      intronic chr16:18903234(-) A-I      intronic chr16:18904764(-) A-I      intronic chr16:18906142(-) A-I      intronic chr16:18906175(-) A-I      intronic chr16:18906192(-) A-I      intronic chr16:18930008(-) A-I      intronic chr16:18930009(-) A-I      intronic chr16:18930025(-) A-I      intronic chr16:18930035(-) A-I      intronic chr16:18930038(-) A-I      intronic chr16:18930039(-) A-I      intronic chr16:18930050(-) A-I      intronic chr16:18930074(-) A-I      intronic chr16:18930486(-) A-I      intronic chr16:18884400(-) A-I      intronic chr16:18884394(-) A-I      intronic chr16:18884393(-) A-I      intronic chr16:18884354(-) A-I      intronic chr16:18884308(-) A-I      intronic chr16:18884306(-) A-I      intronic chr16:18884272(-) A-I      intronic chr16:18884271(-) A-I      intronic chr16:18884259(-) A-I      intronic chr16:18915916(-) A-I      intronic chr16:18915913(-) A-I      intronic chr16:18915897(-) A-I      intronic chr16:18915873(-) A-I      intronic chr16:18915848(-) A-I      intronic chr16:18915792(-) A-I      intronic chr16:18915462(-) A-I      intronic chr16:18915388(-) A-I      intronic chr16:18914392(-) A-I      intronic chr16:18914267(-) A-I      intronic chr16:18906793(-) A-I      intronic chr16:18906779(-) A-I      intronic chr16:18884258(-) A-I      intronic chr16:18884225(-) A-I      intronic chr16:18883185(-) A-I      intronic chr16:18879235(-) A-I      intronic chr16:18879231(-) A-I      intronic chr16:18879225(-) A-I      intronic chr16:18906765(-) A-I      intronic chr16:18906755(-) A-I      intronic chr16:18879199(-) A-I      intronic chr16:18879195(-) A-I      intronic chr16:18879179(-) A-I      intronic chr16:18929546(-) A-I      intronic chr16:18879169(-) A-I      intronic chr16:18860293(-) A-I      intronic chr16:18860284(-) A-I      intronic chr16:18906434(-) A-I      intronic chr16:18906272(-) A-I      intronic chr16:18906268(-) A-I      intronic chr16:18929967(-) A-I      intronic chr16:18885638(-) A-I      intronic chr16:18929499(-) A-I      intronic chr16:18929102(-) A-I      intronic chr16:18929093(-) A-I      intronic chr16:18929032(-) A-I      intronic chr16:18929028(-) A-I      intronic chr16:18928965(-) A-I      intronic chr16:18928928(-) A-I      intronic chr16:18825975(-) A-I      intronic chr16:18826008(-) A-I      intronic chr16:18829400(-) A-I      intronic chr16:18829448(-) A-I      intronic chr16:18829460(-) A-I      intronic chr16:18928750(-) A-I      intronic chr16:18829599(-) A-I      intronic chr16:18829630(-) A-I      intronic chr16:18830228(-) A-I      intronic chr16:18830235(-) A-I      intronic chr16:18830250(-) A-I      intronic chr16:18830270(-) A-I      intronic chr16:18830308(-) A-I      intronic chr16:18830336(-) A-I      intronic chr16:18830420(-) A-I      intronic chr16:18830434(-) A-I      intronic chr16:18831320(-) A-I      intronic chr16:18831345(-) A-I      intronic chr16:18831385(-) A-I      intronic chr16:18831416(-) A-I      intronic chr16:18831452(-) A-I      intronic chr16:18831744(-) A-I      intronic chr16:18928577(-) A-I      intronic chr16:18838583(-) A-I      intronic chr16:18838665(-) A-I      intronic chr16:18838666(-) A-I      intronic chr16:18859782(-) A-I      intronic chr16:18934380(-) A-I      intronic chr16:18934304(-) A-I      intronic chr16:18934295(-) A-I      intronic chr16:18934291(-) A-I      intronic chr16:18934167(-) A-I      intronic chr16:18932424(-) A-I      intronic chr16:18932338(-) A-I      intronic chr16:18925326(-) A-I      intronic chr16:18885654(-) A-I      intronic chr16:18884313(-) A-I      intronic chr16:18898789(-) A-I      intronic chr16:18917206(-) A-I      intronic chr16:18929072(-) A-I      intronic chr16:18934145(-) A-I      intronic chr16:18860340(-) A-I      intronic chr16:18829302(-) A-I      intronic chr16:18885589(-) A-I      intronic chr16:18914420(-) A-I      intronic chr16:18927225(-) A-I      intronic chr16:18831558(-) A-I      intronic chr16:18899850(-) A-I      intronic chr16:18855669(-) A-I      intronic chr16:18825932(-) A-I      intronic chr16:18860271(-) A-I      intronic chr16:18916425(-) A-I      intronic chr16:18829396(-) A-I      intronic chr16:18831699(-) A-I      intronic chr16:18897216(-) A-I      intronic chr16:18890451(-) A-I      intronic chr16:18829644(-) A-I      intronic chr16:18902894(-) A-I      intronic chr16:18885553(-) A-I      intronic chr16:18831689(-) A-I      intronic chr16:18890606(-) A-I      intronic chr16:18925301(-) A-I      intronic chr16:18899231(-) A-I      intronic chr16:18915838(-) A-I      intronic chr16:18831722(-) A-I      intronic chr16:18838501(-) A-I      intronic chr16:18934331(-) A-I      intronic chr16:18859730(-) A-I      intronic chr16:18884376(-) A-I      intronic chr16:18914384(-) A-I      intronic chr16:18825827(-) A-I      intronic chr16:18916500(-) A-I      intronic chr16:18890710(-) A-I      intronic chr16:18934157(-) A-I      intronic chr16:18860306(-) A-I      intronic chr16:18826292(-) A-I      intronic chr16:18829704(-) A-I      intronic chr16:18929585(-) A-I      intronic chr16:18890164(-) A-I      intronic chr16:18885577(-) A-I      intronic chr16:18886066(-) A-I      intronic chr16:18831348(-) A-I      intronic chr16:18885733(-) A-I      intronic chr16:18878611(-) A-I      intronic chr16:18831481(-) A-I      intronic chr16:18900413(-) A-I      intronic chr16:18930899(-) A-I      intronic chr16:18929008(-) A-I      intronic chr16:18929106(-) A-I      intronic chr16:18890082(-) A-I      intronic chr16:18898830(-) A-I      intronic chr16:18831448(-) A-I      intronic chr16:18890566(-) A-I      intronic chr16:18885576(-) A-I      intronic chr16:18859923(-) A-I      intronic chr16:18829811(-) A-I      intronic chr16:18831441(-) A-I      intronic chr16:18885523(-) A-I      intronic chr16:18884638(-) A-I      intronic chr16:18930798(-) A-I      intronic chr16:18890448(-) A-I      intronic chr16:18886747(-) A-I      intronic chr16:18886022(-) A-I      intronic chr16:18890208(-) A-I      intronic chr16:18829281(-) A-I      intronic chr16:18829340(-) A-I      intronic chr16:18915322(-) A-I      intronic chr16:18917686(-) A-I      intronic chr16:18829624(-) A-I      intronic chr16:18884273(-) A-I      intronic chr16:18889536(-) A-I      intronic chr16:18885655(-) A-I      intronic chr16:18885528(-) A-I      intronic chr16:18890570(-) A-I      intronic chr16:18916072(-) A-I      intronic chr16:18830335(-) A-I      intronic chr16:18884726(-) A-I      intronic chr16:18898740(-) A-I      intronic chr16:18831821(-) A-I      intronic chr16:18830283(-) A-I      intronic chr16:18885944(-) A-I      intronic chr16:18917207(-) A-I      intronic chr16:18878708(-) A-I      intronic chr16:18830303(-) A-I      intronic chr16:18859789(-) A-I      intronic chr16:18928971(-) A-I      intronic chr16:18825190(-) A-I      intronic chr16:18930702(-) A-I      intronic chr16:18890210(-) A-I      intronic chr16:18916461(-) A-I      intronic chr16:18931582(-) A-I      intronic chr16:18899443(-) A-I      intronic chr16:18884661(-) A-I      intronic chr16:18884351(-) A-I      intronic chr16:18926458(-) A-I      intronic chr16:18831617(-) A-I      intronic chr16:18889879(-) A-I      intronic chr16:18929906(-) A-I      intronic chr16:18897880(-) A-I      intronic chr16:18898734(-) A-I      intronic chr16:18885533(-) A-I      intronic chr16:18934069(-) A-I      intronic chr16:18928947(-) A-I      intronic chr16:18930757(-) A-I      intronic chr16:18884310(-) A-I      intronic chr16:18897266(-) A-I      intronic chr16:18933878(-) A-I      intronic chr16:18899404(-) A-I      intronic chr16:18929078(-) A-I      intronic chr16:18913997(-) A-I      intronic chr16:18930712(-) A-I      intronic chr16:18826291(-) A-I      intronic chr16:18929963(-) A-I      intronic chr16:18916327(-) A-I      intronic chr16:18916531(-) A-I      intronic chr16:18900283(-) A-I      intronic chr16:18890602(-) A-I      intronic chr16:18890514(-) A-I      intronic chr16:18928744(-) A-I      intronic chr16:18885475(-) A-I      intronic chr16:18825188(-) A-I      intronic chr16:18886088(-) A-I      intronic chr16:18859669(-) A-I      intronic chr16:18831334(-) A-I      intronic chr16:18929064(-) A-I      intronic chr16:18926391(-) A-I      intronic chr16:18925323(-) A-I      intronic chr16:18933848(-) A-I      intronic chr16:18898799(-) A-I      intronic chr16:18884762(-) A-I      intronic chr16:18929092(-) A-I      intronic chr16:18929968(-) A-I      intronic chr16:18831380(-) A-I      intronic chr16:18926524(-) A-I      intronic chr16:18914314(-) A-I      intronic chr16:18859762(-) A-I      intronic chr16:18934075(-) A-I      intronic chr16:18842030(-) A-I      intronic chr16:18826335(-) A-I      intronic chr16:18885526(-) A-I      intronic chr16:18885605(-) A-I      intronic chr16:18829278(-) A-I      intronic chr16:18890686(-) A-I      intronic chr16:18884722(-) A-I      intronic chr16:18831753(-) A-I      intronic chr16:18830334(-) A-I      intronic chr16:18899375(-) A-I      intronic chr16:18829384(-) A-I      intronic chr16:18890536(-) A-I      intronic chr16:18830412(-) A-I      intronic chr16:18915398(-) A-I      intronic chr16:18838610(-) A-I      intronic chr16:18878676(-) A-I      intronic chr16:18859677(-) A-I      intronic chr16:18900006(-) A-I      intronic chr16:18900418(-) A-I      intronic chr16:18900419(-) A-I      intronic chr16:18857415(-) A-I      intronic chr16:18921776(-) A-I      intronic chr16:18826307(-) A-I      intronic chr16:18906679(-) A-I      intronic chr16:18900273(-) A-I      intronic chr16:18890608(-) A-I      intronic chr16:18889747(-) A-I      intronic chr16:18878693(-) A-I      intronic chr16:18889764(-) A-I      intronic chr16:18886142(-) A-I      intronic chr16:18906725(-) A-I      intronic chr16:18859784(-) A-I      intronic chr16:18826035(-) A-I      intronic chr16:18906278(-) A-I      intronic chr16:18884432(-) A-I      intronic chr16:18829828(-) A-I      intronic chr16:18929038(-) A-I      intronic chr16:18934074(-) A-I      intronic chr16:18831384(-) A-I      intronic chr16:18900016(-) A-I      intronic chr16:18890592(-) A-I      intronic chr16:18901909(-) A-I      intronic chr16:18931587(-) A-I      intronic chr16:18890641(-) A-I      intronic chr16:18884763(-) A-I      intronic chr16:18897958(-) A-I      intronic chr16:18926568(-) A-I      intronic chr16:18903382(-) A-I      intronic chr16:18831801(-) A-I      intronic chr16:18916989(-) A-I      intronic chr16:18899365(-) A-I      intronic chr16:18906314(-) A-I      intronic chr16:18899270(-) A-I      intronic chr16:18829814(-) A-I      intronic chr16:18885931(-) A-I      intronic chr16:18901860(-) A-I      intronic chr16:18829321(-) A-I      intronic chr16:18929982(-) A-I      intronic chr16:18825745(-) A-I      intronic chr16:18933883(-) A-I      intronic chr16:18917639(-) A-I      intronic chr16:18889469(-) A-I      intronic chr16:18859641(-) A-I      intronic chr16:18890515(-) A-I      intronic chr16:18931900(-) A-I      intronic chr16:18929502(-) A-I      intronic chr16:18929460(-) A-I      intronic chr16:18830263(-) A-I      intronic chr16:18831645(-) A-I      intronic chr16:18929163(-) A-I      intronic chr16:18916419(-) A-I      intronic chr16:18926523(-) A-I      intronic chr16:18931585(-) A-I      intronic chr16:18889882(-) A-I      intronic chr16:18890473(-) A-I      intronic chr16:18860210(-) A-I      intronic chr16:18853990(-) A-I      intronic chr16:18897868(-) A-I      intronic chr16:18899914(-) A-I      intronic chr16:18885712(-) A-I      intronic chr16:18884723(-) A-I      intronic chr16:18860144(-) A-I      intronic chr16:18889726(-) A-I      intronic chr16:18901824(-) A-I      intronic chr16:18831340(-) A-I      intronic chr16:18899339(-) A-I      intronic chr16:18930216(-) A-I      intronic chr16:18831456(-) A-I      intronic chr16:18890250(-) A-I      intronic chr16:18928983(-) A-I      intronic chr16:18884662(-) A-I      intronic chr16:18934029(-) A-I      intronic chr16:18859844(-) A-I      intronic chr16:18914221(-) A-I      intronic chr16:18926558(-) A-I      intronic chr16:18830360(-) A-I      intronic chr16:18890108(-) A-I      intronic chr16:18831465(-) A-I      intronic chr16:18829339(-) A-I      intronic chr16:18878770(-) A-I      intronic chr16:18878673(-) A-I      intronic chr16:18899993(-) A-I      intronic chr16:18890576(-) A-I      intronic chr16:18925911(-) A-I      intronic chr16:18934158(-) A-I      intronic chr16:18831725(-) A-I      intronic chr16:18884710(-) A-I      intronic chr16:18829508(-) A-I      intronic chr16:18915392(-) A-I      intronic chr16:18831640(-) A-I      intronic chr16:18830206(-) A-I      intronic chr16:18879302(-) A-I      intronic chr16:18886725(-) A-I      intronic chr16:18831673(-) A-I      intronic chr16:18900351(-) A-I      intronic chr16:18886141(-) A-I      intronic chr16:18930064(-) A-I      intronic chr16:18928966(-) A-I      intronic chr16:18829607(-) A-I      intronic chr16:18889759(-) A-I      intronic chr16:18890728(-) A-I      intronic chr16:18885740(-) A-I      intronic chr16:18897205(-) A-I      intronic chr16:18930915(-) A-I      intronic chr16:18878593(-) A-I      intronic chr16:18838604(-) A-I      intronic chr16:18878612(-) A-I      intronic chr16:18859740(-) A-I      intronic chr16:18859776(-) A-I      intronic chr16:18859753(-) A-I      intronic chr16:18921757(-) A-I      intronic chr16:18838742(-) A-I      intronic chr16:18884786(-) A-I      intronic chr16:18884328(-) A-I      intronic chr16:18898751(-) A-I      intronic chr16:18884999(-) A-I      intronic chr16:18879303(-) A-I      intronic chr16:18878599(-) A-I      intronic chr16:18929077(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SMG1	chr16:18823762(-) A-I intron -    21960545 chr16:18829278(-) A-G intron -    22484847 chr16:18829302(-) A-G intron -    22484847 chr16:18829607(-) A-G intron -    22484847 chr16:18831441(-) A-G intron -    22484847 chr16:18859740(-) A-G intron -    22484847 chr16:18859776(-) A-G intron -    22484847 chr16:18859784(-) A-G intron -    22484847 chr16:18859789(-) A-G intron -    22484847 chr16:18859923(-) A-G intron -    22484847 chr16:18860340(-) A-G intron -    22484847 chr16:18889469(-) A-G intron -    22484847 chr16:18929906(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SMG1	chr16:18816276-18816277(-) m6A 3'UTR       27773535 chr16:18816433-18816434(-) m6A 3'UTR       27773535 chr16:18820258-18820259(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr16:18820285-18820286(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr16:18820297-18820298(-) Y 3'UTR       26075521 chr16:18820329-18820330(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr16:18820475-18820476(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr16:18820484-18820485(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr16:18820501-18820502(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr16:18820543-18820544(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr16:18820615-18820616(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr16:18820642-18820643(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr16:18820724-18820725(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr16:18820765-18820766(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr16:18820850-18820851(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr16:18820881-18820882(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr16:18820904-18820905(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr16:18823085-18823086(-) m6A CDS       24209618//24981863//27773535//22575960//22608085 chr16:18840740-18840741(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr16:18840781-18840782(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr16:18840836-18840837(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr16:18840863-18840864(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr16:18840901-18840902(-) m6A CDS       24284625//24209618//24981863//27371828//22608085 chr16:18840970-18840971(-) m6A CDS       24284625//24981863//27371828//22608085 chr16:18840983-18840984(-) m6A CDS       24284625//24981863//27371828//22608085 chr16:18841001-18841002(-) m6A CDS       24284625//24981863//22608085 chr16:18841014-18841015(-) m6A CDS       24284625//24981863//22608085 chr16:18844302-18844303(-) m6A CDS       24981863//22608085 chr16:18844349-18844350(-) m6A CDS       24981863//22608085 chr16:18844373-18844374(-) m6A CDS       24981863//22608085 chr16:18844395-18844396(-) m6A CDS       24981863//22608085 chr16:18847828-18847829(-) m6A CDS       27773535 chr16:18848645-18848646(-) m6A CDS       - chr16:18848657-18848658(-) m6A CDS       - chr16:18848760-18848761(-) m6A CDS       27773535 chr16:18849472-18849473(-) m6A CDS       24209618//27773535//22575960 chr16:18849477-18849478(-) m6A CDS       24209618//27773535//22575960 chr16:18851249-18851250(-) m6A CDS//exon       24284625 chr16:18852973-18852974(-) m6A CDS//exon       27773535 chr16:18852984-18852985(-) m6A CDS//exon       27773535 chr16:18853029-18853030(-) m6A CDS//exon       27773535 chr16:18858792-18858793(-) m6A CDS//exon       24981863 chr16:18865998-18865999(-) m6A CDS       27773535 chr16:18866014-18866015(-) m6A CDS       27773535 chr16:18866056-18866057(-) m6A CDS       27773535 chr16:18866094-18866095(-) m6A CDS       27773535 chr16:18866131-18866132(-) m6A CDS       24981863//27773535 chr16:18937550-18937551(-) m6A 5'UTR       25456834//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SMG1	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART22
Interactor2: SMG1

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//PITA//Targetscan
Support Database	RepTar//ViRBase//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	Downregulation
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.