Detail Information

Basic Information:


  VIRBase ID:  

VHID00419155

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART22:           G3BP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART22 G3BP2
miRBase
Accession/Entrez ID		 MIMAT0010132 9908
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR G3BP2
chr4:76588608(-) A-I      intronic
chr4:76592962(-) A-I      intronic
chr4:76592974(-) A-I      intronic
chr4:76575031(-) A-I      intronic
chr4:76588517(-) A-I      intronic
chr4:76588590(-) A-I      intronic
chr4:76588592(-) A-I      intronic
chr4:76588839(-) A-I      intronic
chr4:76588925(-) A-I      intronic
chr4:76589216(-) A-I      intronic
chr4:76589218(-) A-I      intronic
chr4:76589232(-) A-I      intronic
chr4:76589241(-) A-I      intronic
chr4:76589263(-) A-I      intronic
chr4:76589339(-) A-I      intronic
chr4:76575542(-) A-I      intronic
chr4:76573339(-) A-I      intronic
chr4:76586759(-) A-I      intronic
chr4:76590027(-) A-I      intronic
chr4:76592942(-) A-I      intronic
chr4:76589137(-) A-I      intronic
chr4:76588981(-) A-I      intronic
chr4:76588659(-) A-I      intronic
chr4:76590019(-) A-I      intronic
chr4:76590149(-) A-I      intronic
chr4:76588944(-) A-I      intronic
chr4:76590191(-) A-I      intronic
chr4:76589250(-) A-I      intronic
chr4:76590025(-) A-I      intronic
chr4:76590686(-) A-I      intronic
chr4:76588604(-) A-I      intronic
chr4:76575535(-) A-I      intronic
chr4:76590794(-) A-I      intronic
chr4:76589970(-) A-I      intronic
chr4:76575555(-) A-I      intronic
chr4:76589155(-) A-I      intronic
chr4:76587619(-) A-I      intronic
chr4:76588802(-) A-I      intronic
chr4:76592988(-) A-I      intronic
chr4:76587518(-) A-I      intronic
chr4:76581339(-) A-I      intronic
chr4:76588705(-) A-I      intronic
chr4:76586525(-) A-I      intronic
chr4:76595110(-) A-I      intronic
chr4:76590700(-) A-I      intronic
chr4:76589262(-) A-I      intronic
chr4:76575916(-) A-I      intronic
chr4:76589206(-) A-I      intronic
chr4:76589920(-) A-I      intronic
chr4:76588483(-) A-I      intronic
chr4:76589590(-) A-I      intronic
chr4:76576025(-) A-I      intronic
chr4:76589295(-) A-I      intronic
chr4:76575979(-) A-I      intronic
chr4:76575965(-) A-I      intronic
chr4:76588922(-) A-I      intronic
chr4:76575917(-) A-I      intronic
chr4:76589200(-) A-I      intronic
chr4:76588501(-) A-I      intronic
chr4:76589196(-) A-I      intronic
chr4:76581403(-) A-I      intronic
chr4:76588980(-) A-I      intronic
chr4:76589556(-) A-I      intronic
chr4:76587609(-) A-I      intronic
chr4:76586550(-) A-I      intronic
chr4:76589247(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED G3BP2
chr4:76573549(-) G-T intron -    22484847
chr4:76575535(-) A-G intron -    22484847
chr4:76575613(-) T-G intron -    22484847
chr4:76575916(-) A-G intron -    22484847
chr4:76575917(-) A-G intron -    22484847
chr4:76575965(-) A-G intron -    22484847
chr4:76588483(-) A-G intron -    22484847
chr4:76588604(-) A-G intron -    22484847
chr4:76588655(-) A-G intron -    22484847
chr4:76588659(-) A-G intron -    22484847
chr4:76588705(-) A-G intron -    22484847
chr4:76588802(-) A-G intron -    22484847
chr4:76588922(-) A-G intron -    22484847
chr4:76588956(-) A-G intron -    22484847
chr4:76588957(-) A-G intron -    22484847
chr4:76588980(-) A-G intron -    22484847
chr4:76588981(-) A-G intron -    22484847
chr4:76589137(-) A-G intron -    22484847
chr4:76589196(-) A-G intron -    22484847
chr4:76589200(-) A-G intron -    22484847
chr4:76589206(-) A-G intron -    22484847
chr4:76589247(-) A-G intron -    22484847
chr4:76589250(-) A-G intron -    22484847
chr4:76589261(-) A-G intron -    22484847
chr4:76589295(-) A-G intron -    22484847
chr4:76589312(-) A-G intron -    22484847
chr4:76589338(-) A-G intron -    22484847
chr4:76589590(-) A-C intron -    22484847
chr4:76589920(-) A-G intron -    22484847
chr4:76590019(-) A-G intron -    22484847
chr4:76590719(-) A-G intron -    22484847
chr4:76593034(-) A-G intron -    22484847
chr4:76595034(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase G3BP2
chr4:76569891-76569892(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr4:76569920-76569921(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr4:76569940-76569941(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr4:76569980-76569981(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:76569991-76569992(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:76570122-76570123(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr4:76570164-76570165(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr4:76570174-76570175(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr4:76570242-76570243(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr4:76570337-76570338(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr4:76570347-76570348(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr4:76570366-76570367(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr4:76570389-76570390(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr4:76570405-76570406(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr4:76570459-76570460(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr4:76570625-76570626(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr4:76570654-76570655(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr4:76570673-76570674(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr4:76570703-76570704(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr4:76570813-76570814(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr4:76570837-76570838(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr4:76571548-76571549(-) m6A CDS       24981863//26404942//27773535
chr4:76571620-76571621(-) m6A CDS       27773535
chr4:76574023-76574024(-) m6A exon//intron       27371828
chr4:76574030-76574031(-) m6A exon//intron       27371828
chr4:76580258-76580259(-) m6A 3'UTR//CDS//exon       24981863
chr4:76580279-76580280(-) m6A 3'UTR//CDS//exon       24981863
chr4:76580315-76580316(-) m6A 3'UTR//CDS//exon       24981863
chr4:76580325-76580326(-) m6A 3'UTR//CDS//exon       24981863
chr4:76580345-76580346(-) m6A 3'UTR//CDS//exon       24981863
chr4:76580359-76580360(-) m6A 3'UTR//CDS//exon       24981863
chr4:76580362-76580363(-) Am 3'UTR//CDS//exon       -
chr4:76580365-76580366(-) m6A 3'UTR//CDS//exon       24981863
chr4:76580384-76580385(-) m6A 3'UTR//CDS//exon       24981863
chr4:76580390-76580391(-) m6A 3'UTR//CDS//exon       24981863
chr4:76581001-76581002(-) m6A 3'UTR//CDS//exon       24981863
chr4:76581016-76581017(-) m6A 3'UTR//CDS//exon       24981863
chr4:76581028-76581029(-) m6A 3'UTR//CDS//exon       24981863
chr4:76598462-76598463(-) m6A 5'UTR//exon//intron       24284625//24981863//27773536
chr4:76598527-76598528(-) m6A 5'UTR//exon//intron       24284625//24981863
chr4:76598628-76598629(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate G3BP2
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART22
Interactor2: G3BP2

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence miRanda//PARalyzer//PITA//Rep//Targetscan
Support Database RepTar//ViRBase//VmiReg

References:


PMID 22100165 Target region 3'UTR
Source RepTar//ViRBase//VmiReg Interactor1 expression None
Tissue or cell line BC-1 cells Interactor2 expression Downregulation
Description Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.

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