Detail Information

Basic Information:


  VIRBase ID:  

VHID00419065

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART22:           N4BP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART22 N4BP1
miRBase
Accession/Entrez ID		 MIMAT0010132 9683
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR N4BP1
chr16:48628556(-) A-I      intronic
chr16:48635651(-) A-I      intronic
chr16:48604949(-) A-I      intronic
chr16:48618603(-) A-I      intronic
chr16:48619880(-) A-I      intronic
chr16:48619896(-) A-I      intronic
chr16:48579692(-) A-I      intronic
chr16:48627710(-) A-I      intronic
chr16:48627789(-) A-I      intronic
chr16:48579937(-) A-I      intronic
chr16:48604840(-) A-I      intronic
chr16:48579674(-) A-I      intronic
chr16:48578972(-) A-I      intronic
chr16:48579389(-) A-I      intronic
chr16:48579402(-) A-I      intronic
chr16:48628534(-) A-I      intronic
chr16:48628430(-) A-I      intronic
chr16:48641984(-) A-I      intronic
chr16:48638244(-) A-I      intronic
chr16:48638243(-) A-I      intronic
chr16:48579013(-) A-I      intronic
chr16:48635859(-) A-I      intronic
chr16:48635714(-) A-I      intronic
chr16:48579045(-) A-I      intronic
chr16:48579122(-) A-I      intronic
chr16:48635673(-) A-I      intronic
chr16:48597171(-) A-I      intronic
chr16:48603346(-) A-I      intronic
chr16:48604422(-) A-I      intronic
chr16:48604506(-) A-I      intronic
chr16:48604507(-) A-I      intronic
chr16:48604818(-) A-I      intronic
chr16:48604819(-) A-I      intronic
chr16:48604896(-) A-I      intronic
chr16:48579143(-) A-I      intronic
chr16:48604906(-) A-I      intronic
chr16:48604916(-) A-I      intronic
chr16:48604934(-) A-I      intronic
chr16:48579359(-) A-I      intronic
chr16:48629138(-) A-I      intronic
chr16:48638205(-) A-I      intronic
chr16:48628509(-) A-I      intronic
chr16:48579259(-) A-I      intronic
chr16:48642187(-) A-I      intronic
chr16:48579069(-) A-I      intronic
chr16:48606812(-) A-I      intronic
chr16:48643122(-) A-I      intronic
chr16:48641901(-) A-I      intronic
chr16:48636782(-) A-I      intronic
chr16:48638407(-) A-I      intronic
chr16:48638342(-) A-I      intronic
chr16:48643074(-) A-I      intronic
chr16:48636799(-) A-I      intronic
chr16:48579426(-) A-I      intronic
chr16:48643043(-) A-I      intronic
chr16:48579450(-) A-I      intronic
chr16:48627718(-) A-I      intronic
chr16:48578930(-) A-I      intronic
chr16:48619382(-) A-I      intronic
chr16:48639040(-) A-I      intronic
chr16:48638217(-) A-I      intronic
chr16:48579365(-) A-I      intronic
chr16:48579771(-) A-I      intronic
chr16:48619376(-) A-I      intronic
chr16:48628351(-) A-I      intronic
chr16:48628403(-) A-I      intronic
chr16:48643004(-) A-I      intronic
chr16:48635746(-) A-I      intronic
chr16:48603431(-) A-I      intronic
chr16:48579745(-) A-I      intronic
chr16:48579079(-) A-I      intronic
chr16:48579481(-) A-I      intronic
chr16:48639214(-) A-I      intronic
chr16:48639012(-) A-I      intronic
chr16:48619844(-) A-I      intronic
chr16:48616945(-) A-I      intronic
chr16:48638352(-) A-I      intronic
chr16:48628386(-) A-I      intronic
chr16:48579293(-) A-I      intronic
chr16:48639082(-) A-I      intronic
chr16:48639011(-) A-I      intronic
chr16:48643031(-) A-I      intronic
chr16:48635883(-) A-I      intronic
chr16:48579488(-) A-I      intronic
chr16:48641869(-) A-I      intronic
chr16:48635875(-) A-I      intronic
chr16:48643010(-) A-I      intronic
chr16:48638264(-) A-I      intronic
chr16:48628363(-) A-I      intronic
chr16:48579148(-) A-I      intronic
chr16:48627813(-) A-I      intronic
chr16:48641905(-) A-I      intronic
chr16:48619289(-) A-I      intronic
chr16:48627830(-) A-I      intronic
chr16:48628542(-) A-I      intronic
chr16:48579855(-) A-I      intronic
chr16:48639137(-) A-I      intronic
chr16:48607497(-) A-I      intronic
chr16:48642000(-) A-I      intronic
chr16:48579367(-) A-I      intronic
chr16:48579843(-) A-I      intronic
chr16:48636121(-) A-I      intronic
chr16:48579354(-) A-I      intronic
chr16:48639136(-) A-I      intronic
chr16:48579932(-) A-I      intronic
chr16:48578905(-) A-I      intronic
chr16:48579403(-) A-I      intronic
chr16:48638355(-) A-I      intronic
chr16:48628485(-) A-I      intronic
chr16:48627801(-) A-I      intronic
chr16:48607337(-) A-I      intronic
chr16:48628406(-) A-I      intronic
chr16:48578978(-) A-I      intronic
chr16:48579774(-) A-I      intronic
chr16:48619801(-) A-I      intronic
chr16:48579113(-) A-I      intronic
chr16:48636861(-) A-I      intronic
chr16:48579905(-) A-I      intronic
chr16:48579734(-) A-I      intronic
chr16:48636842(-) A-I      intronic
chr16:48606838(-) A-I      intronic
chr16:48639016(-) A-I      intronic
chr16:48579901(-) A-I      intronic
chr16:48639032(-) A-I      intronic
chr16:48627994(-) A-I      intronic
chr16:48579118(-) A-I      intronic
chr16:48638265(-) A-I      intronic
chr16:48579236(-) A-I      intronic
chr16:48629211(-) A-I      intronic
chr16:48641911(-) A-I      intronic
chr16:48639081(-) A-I      intronic
chr16:48579014(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED N4BP1
chr16:48638265(-) A-G intron -    22484847
chr16:48638407(-) A-G intron -    22484847
chr16:48639081(-) A-G intron -    22484847
chr16:48639082(-) A-G intron -    22484847
chr16:48642000(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase N4BP1
chr16:48576510-48576511(-) m6A 3'UTR       27773535
chr16:48576562-48576563(-) m6A 3'UTR       27773535
chr16:48576651-48576652(-) m6A 3'UTR       24981863//27773535
chr16:48576720-48576721(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr16:48576735-48576736(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr16:48576768-48576769(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr16:48576881-48576882(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48576892-48576893(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48576945-48576946(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:48576980-48576981(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr16:48580024-48580025(-) m6A exon//intron       27773535
chr16:48587502-48587503(-) m6A CDS//exon       27773535
chr16:48594699-48594700(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:48594720-48594721(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr16:48594810-48594811(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr16:48594960-48594961(-) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr16:48595088-48595089(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595096-48595097(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595114-48595115(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595120-48595121(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595140-48595141(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr16:48595146-48595147(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr16:48595160-48595161(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr16:48595197-48595198(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr16:48595265-48595266(-) m6A CDS//exon       24284625//24209618//24981863//28052920//27773535//22608085
chr16:48595328-48595329(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22608085
chr16:48595337-48595338(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22608085
chr16:48595372-48595373(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22608085
chr16:48595425-48595426(-) m6A CDS//exon       24284625//24981863//28052920//27773535//22608085
chr16:48595437-48595438(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr16:48595487-48595488(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr16:48595498-48595499(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr16:48595532-48595533(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr16:48595610-48595611(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr16:48595798-48595799(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48595806-48595807(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48595829-48595830(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595865-48595866(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595916-48595917(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595958-48595959(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48595998-48595999(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48596047-48596048(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48596070-48596071(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48596116-48596117(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr16:48596212-48596213(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085
chr16:48596296-48596297(-) m6A 5'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr16:48596325-48596326(-) m6A 5'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr16:48596331-48596332(-) m6A 5'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate N4BP1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART22
Interactor2: N4BP1

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence cRep//miRanda//PARalyzer//Rep//Targetscan
Support Database RepTar//ViRBase//VIRmiRNA//VmiReg

References:


PMID 22100165 Target region 3'UTR
Source RepTar//ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line BC-1 cells Interactor2 expression Downregulation
Description Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.

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