Detail Information

Basic Information:


  VIRBase ID:  

VHID00416897

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-3p:           PRTG:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART21-3p PRTG
miRBase
Accession/Entrez ID		 MIMAT0010131 283659
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - IGDCC5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PRTG
chr15:55914935(-) A-I      intronic
chr15:55914931(-) A-I      intronic
chr15:56011146(-) A-I      intronic
chr15:55914937(-) A-I      intronic
chr15:56011136(-) A-I      intronic
chr15:55915600(-) A-I      intronic
chr15:55914938(-) A-I      intronic
chr15:55915617(-) A-I      intronic
chr15:56011185(-) A-I      intronic
chr15:55914799(-) A-I      intronic
chr15:55914794(-) A-I      intronic
chr15:55914966(-) A-I      intronic
chr15:55914746(-) A-I      intronic
chr15:55914714(-) A-I      intronic
chr15:55914667(-) A-I      intronic
chr15:55914636(-) A-I      intronic
chr15:55914553(-) A-I      intronic
chr15:55914927(-) A-I      intronic
chr15:55914548(-) A-I      intronic
chr15:56024821(-) A-I      intronic
chr15:56024463(-) A-I      intronic
chr15:56023680(-) A-I      intronic
chr15:55914531(-) A-I      intronic
chr15:55914499(-) A-I      intronic
chr15:55914491(-) A-I      intronic
chr15:55914451(-) A-I      intronic
chr15:56023706(-) A-I      intronic
chr15:56023690(-) A-I      intronic
chr15:55915006(-) A-I      intronic
chr15:56022935(-) A-I      intronic
chr15:56011142(-) A-I      intronic
chr15:55963917(-) A-I      intronic
chr15:55963059(-) A-I      intronic
chr15:55962895(-) A-I      intronic
chr15:56016244(-) A-I      intronic
chr15:55939362(-) A-I      intronic
chr15:55936122(-) A-I      intronic
chr15:55935105(-) A-I      intronic
chr15:55915717(-) A-I      intronic
chr15:55915665(-) A-I      intronic
chr15:55915643(-) A-I      intronic
chr15:55915549(-) A-I      intronic
chr15:55962987(-) A-I      intronic
chr15:55915522(-) A-I      intronic
chr15:55915521(-) A-I      intronic
chr15:55958026(-) A-I      intronic
chr15:55915015(-) A-I      intronic
chr15:55914984(-) A-I      intronic
chr15:55915653(-) A-I      intronic
chr15:55914958(-) A-I      intronic
chr15:55914916(-) A-I      intronic
chr15:55914913(-) A-I      intronic
chr15:55914912(-) A-I      intronic
chr15:55914501(-) A-I      intronic
chr15:55914910(-) A-I      intronic
chr15:55914898(-) A-I      intronic
chr15:55914840(-) A-I      intronic
chr15:55956477(-) A-I      intronic
chr15:55918395(-) A-I      intronic
chr15:55915720(-) A-I      intronic
chr15:55914928(-) A-I      intronic
chr15:55956941(-) A-I      intronic
chr15:55915764(-) A-I      intronic
chr15:56016226(-) A-I      intronic
chr15:55914720(-) A-I      intronic
chr15:55914554(-) A-I      intronic
chr15:55950642(-) A-I      intronic
chr15:55934571(-) A-I      intronic
chr15:55915763(-) A-I      intronic
chr15:55950769(-) A-I      intronic
chr15:55956949(-) A-I      intronic
chr15:55914710(-) A-I      intronic
chr15:55935103(-) A-I      intronic
chr15:56001281(-) A-I      intronic
chr15:55914733(-) A-I      intronic
chr15:56016230(-) A-I      intronic
chr15:55927000(-) A-I      intronic
chr15:55938329(-) A-I      intronic
chr15:55963931(-) A-I      intronic
chr15:55998881(-) A-I      intronic
chr15:55990567(-) A-I      intronic
chr15:55914544(-) A-I      intronic
chr15:55950680(-) A-I      intronic
chr15:56025989(-) A-I      intronic
chr15:55914508(-) A-I      intronic
chr15:56011160(-) A-I      intronic
chr15:55914862(-) A-I      intronic
chr15:55915007(-) A-I      intronic
chr15:55918581(-) A-I      intronic
chr15:56012146(-) A-I      intronic
chr15:55941843(-) A-I      intronic
chr15:55915574(-) A-I      intronic
chr15:55950711(-) A-I      intronic
chr15:56025252(-) A-I      intronic
chr15:55998945(-) A-I      intronic
chr15:55917774(-) A-I      intronic
chr15:55983797(-) A-I      intronic
chr15:55915509(-) A-I      intronic
chr15:55913732(-) A-I      intronic
chr15:56025942(-) A-I      intronic
chr15:55963800(-) A-I      intronic
chr15:55950704(-) A-I      intronic
chr15:55910241(-) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PRTG
chr15:55903803-55903804(-) m6A 3'UTR       27773535
chr15:55903958-55903959(-) m6A 3'UTR       27773535
chr15:55904082-55904083(-) m6A 3'UTR       27773535
chr15:55904094-55904095(-) m6A 3'UTR       27773535
chr15:55905044-55905045(-) m6A 3'UTR       24981863
chr15:55905089-55905090(-) m6A 3'UTR       24981863
chr15:55912000-55912001(-) m6A 3'UTR       24981863//22608085
chr15:55912007-55912008(-) m6A 3'UTR       24981863//22608085
chr15:55912014-55912015(-) m6A 3'UTR       24981863//22608085
chr15:55912126-55912127(-) m6A 3'UTR       27773535//22608085
chr15:55912155-55912156(-) m6A 3'UTR       24284625//27773535//22608085
chr15:55912295-55912296(-) m6A CDS       24284625//25456834//24981863//27773535//22608085
chr15:55912326-55912327(-) m6A CDS       24284625//25456834//24981863//27773535//22608085
chr15:55912353-55912354(-) m6A CDS       24284625//25456834//24981863//27773535//22608085
chr15:55912370-55912371(-) m6A CDS       24284625//25456834//24981863//27773535//22608085
chr15:55912393-55912394(-) m6A CDS       24284625//25456834//24981863//27773535//22608085
chr15:55948269-55948270(-) m6A 3'UTR//intron       27773535
chr15:55948339-55948340(-) m6A 3'UTR//intron       27773535
chr15:55948363-55948364(-) m6A 3'UTR//intron       27773535
chr15:55948373-55948374(-) m6A 3'UTR//intron       27773535
chr15:55948428-55948429(-) m6A 3'UTR//intron       27773535
chr15:55948444-55948445(-) m6A 3'UTR//intron       27773535
chr15:55948462-55948463(-) m6A 3'UTR//intron       27773535
chr15:56035175-56035176(-) m6A 5'UTR       25456834//24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PRTG
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART21-3p
Crizotinib       11626560

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART21-3p
Interactor2: PRTG

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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