Basic Information:

  VIRBase ID:  

VHID00413893

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-5p:  MIMAT0010130          JAM3:  NM_032801     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART21-5p	JAM3
miRBase Accession/Entrez ID	MIMAT0010130	83700
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	JAM-2//JAM-3//JAM-C//JAMC

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	JAM3	chr11:133968914(+) A-I      intronic chr11:133942598(+) A-I      intronic chr11:133969762(+) A-I      intronic chr11:133989083(+) A-I      intronic chr11:133989055(+) A-I      intronic chr11:133989056(+) A-I      intronic chr11:133989082(+) A-I      intronic chr11:133989073(+) A-I      intronic chr11:134016550(+) A-I      intronic chr11:133948787(+) A-I      intronic chr11:134016555(+) A-I      intronic chr11:134016698(+) A-I      intronic chr11:134017170(+) A-I      intronic chr11:133942619(+) A-I      intronic chr11:133948884(+) A-I      intronic chr11:134016695(+) A-I      intronic chr11:133948700(+) A-I      intronic chr11:133948695(+) A-I      intronic chr11:134016643(+) A-I      intronic chr11:133942711(+) A-I      intronic chr11:133946842(+) A-I      intronic chr11:134017548(+) A-I      intronic chr11:133948795(+) A-I      intronic chr11:133961144(+) A-I      intronic chr11:133942590(+) A-I      intronic chr11:133942707(+) A-I      intronic chr11:133968948(+) A-I      intronic chr11:133956890(+) A-I      intronic chr11:133971734(+) A-I      intronic chr11:133942644(+) A-I      intronic chr11:133971904(+) A-I      intronic chr11:133961457(+) A-I      intronic chr11:133948899(+) A-I      intronic chr11:133971915(+) A-I      intronic chr11:133979077(+) A-I      intronic chr11:133982235(+) A-I      intronic chr11:133948889(+) A-I      intronic chr11:133982259(+) A-I      intronic chr11:133965406(+) A-I      intronic chr11:133999258(+) A-I      intronic chr11:134017147(+) A-I      intronic chr11:133999619(+) A-I      intronic chr11:133999641(+) A-I      intronic chr11:133999877(+) A-I      intronic chr11:134017228(+) A-I      intronic chr11:133946830(+) A-I      intronic chr11:134016681(+) A-I      intronic chr11:134017188(+) A-I      intronic chr11:133942714(+) A-I      intronic chr11:134016549(+) A-I      intronic chr11:133969602(+) A-I      intronic chr11:134017655(+) A-I      intronic chr11:134017218(+) A-I      intronic chr11:133945484(+) A-I      intronic chr11:133968937(+) A-I      intronic chr11:133968942(+) A-I      intronic chr11:133999842(+) A-I      intronic chr11:133945505(+) A-I      intronic chr11:133942301(+) A-I      intronic chr11:133942684(+) A-I      intronic chr11:133948883(+) A-I      intronic chr11:133965403(+) A-I      intronic chr11:133945508(+) A-I      intronic chr11:133978888(+) A-I      intronic chr11:134005886(+) A-I      intronic chr11:134016628(+) A-I      intronic chr11:133946869(+) A-I      intronic chr11:134017511(+) A-I      intronic chr11:134017139(+) A-I      intronic chr11:134017094(+) A-I      intronic chr11:134016563(+) A-I      intronic chr11:134005502(+) A-I      intronic chr11:133942788(+) A-I      intronic chr11:133942643(+) A-I      intronic chr11:134016699(+) A-I      intronic chr11:133978905(+) A-I      intronic chr11:134017547(+) A-I      intronic chr11:134017134(+) A-I      intronic chr11:134017053(+) A-I      intronic chr11:133942368(+) A-I      intronic chr11:134017202(+) A-I      intronic chr11:134017566(+) A-I      intronic chr11:134005477(+) A-I      intronic chr11:134016680(+) A-I      intronic chr11:133948662(+) A-I      intronic chr11:133999273(+) A-I      intronic chr11:133961269(+) A-I      intronic chr11:134005519(+) A-I      intronic chr11:133965930(+) A-I      intronic chr11:133969011(+) A-I      intronic chr11:133999648(+) A-I      intronic chr11:134006929(+) A-I      intronic chr11:133942785(+) A-I      intronic chr11:134017072(+) A-I      intronic chr11:133971888(+) A-I      intronic chr11:133942814(+) A-I      intronic chr11:133965395(+) A-I      intronic chr11:133965997(+) A-I      intronic chr11:133999307(+) A-I      intronic chr11:133969016(+) A-I      intronic chr11:134017234(+) A-I      intronic chr11:133969582(+) A-I      intronic chr11:134017588(+) A-I      intronic chr11:134017604(+) A-I      intronic chr11:133968999(+) A-I      intronic chr11:133965920(+) A-I      intronic chr11:133968974(+) A-I      intronic chr11:133942336(+) A-I      intronic chr11:133966096(+) A-I      intronic chr11:133942658(+) A-I      intronic chr11:133942367(+) A-I      intronic chr11:134017306(+) A-I      intronic chr11:133942595(+) A-I      intronic chr11:133968870(+) A-I      intronic chr11:134016533(+) A-I      intronic chr11:134017093(+) A-I      intronic chr11:133945557(+) A-I      intronic chr11:133945544(+) A-I      intronic chr11:133969558(+) A-I      intronic chr11:133945574(+) A-I      intronic chr11:134017091(+) A-I      intronic chr11:133999285(+) A-I      intronic chr11:134017628(+) A-I      intronic chr11:133958749(+) A-I      intronic chr11:133999250(+) A-I      intronic chr11:133947388(+) A-I      intronic chr11:133977697(+) A-I      intronic chr11:133965952(+) A-I      intronic chr11:134017358(+) A-I      intronic chr11:133965998(+) A-I      intronic chr11:134017543(+) A-I      intronic chr11:134019218(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	JAM3	chr11:134019218(+) A-I exon 3'UTR    19478186

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	JAM3	chr11:133938931-133938932(+) m6A 5'UTR       24981863 chr11:134015179-134015180(+) m6A exon//intron       27773535 chr11:134018556-134018557(+) m6A CDS//exon       24209618//24981863//22608085 chr11:134018666-134018667(+) m6A CDS//exon       24209618//24981863//22608085 chr11:134018676-134018677(+) m6A CDS//exon       24209618//24981863//22608085 chr11:134019051-134019052(+) m6A CDS//exon       24209618//24981863//22608085 chr11:134019077-134019078(+) m6A 3'UTR//exon       24209618//25456834//24981863//22608085 chr11:134019132-134019133(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr11:134019167-134019168(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr11:134019177-134019178(+) m6A 3'UTR       24209618//25456834//24981863//26404942//22608085 chr11:134019272-134019273(+) m6A 3'UTR       24209618//25456834//24981863//26404942//22608085 chr11:134019302-134019303(+) m6A 3'UTR       24209618//25456834//24981863//26404942//22608085 chr11:134019485-134019486(+) m6A 3'UTR       24209618//22608085 chr11:134019513-134019514(+) m6A 3'UTR       24209618//24981863//22608085 chr11:134019561-134019562(+) m6A 3'UTR       24981863//22608085 chr11:134019650-134019651(+) m6A 3'UTR       24981863//22608085 chr11:134019705-134019706(+) m6A 3'UTR       24981863//22608085 chr11:134019743-134019744(+) m6A 3'UTR       24981863 chr11:134020706-134020707(+) m6A 3'UTR       27773535//22608085 chr11:134020854-134020855(+) m6A 3'UTR       24209618//24981863//22608085 chr11:134020877-134020878(+) m6A 3'UTR       24209618//24981863//22608085 chr11:134020953-134020954(+) m6A 3'UTR       24209618//24981863//22608085 chr11:134020960-134020961(+) m6A 3'UTR       24209618//24981863//22608085 chr11:134021108-134021109(+) m6A 3'UTR       24209618 chr11:134021137-134021138(+) m6A 3'UTR       24209618 chr11:134021580-134021581(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	JAM3	Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART21-5p
Interactor2: JAM3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg