Detail Information

Basic Information:


  VIRBase ID:  

VHID00413880

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-5p:           SYNC:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART21-5p SYNC
miRBase
Accession/Entrez ID		 MIMAT0010130 81493
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - SYNC1//SYNCOILIN

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SYNC
chr1:33159705(-) A-I      intronic
chr1:33159593(-) A-I      intronic
chr1:33157071(-) A-I      intronic
chr1:33149374(-) A-I      intronic
chr1:33156955(-) A-I      intronic
chr1:33149372(-) A-I      intronic
chr1:33149371(-) A-I      intronic
chr1:33156913(-) A-I      intronic
chr1:33147105(-) A-I      3'UTR
chr1:33146937(-) A-I      3'UTR
chr1:33146932(-) A-I      3'UTR
chr1:33146920(-) A-I      3'UTR
chr1:33146918(-) A-I      3'UTR
chr1:33146907(-) A-I      3'UTR
chr1:33158892(-) A-I      intronic
chr1:33147077(-) A-I      3'UTR
chr1:33146905(-) A-I      3'UTR
chr1:33146904(-) A-I      3'UTR
chr1:33146896(-) A-I      3'UTR
chr1:33146895(-) A-I      3'UTR
chr1:33146881(-) A-I      3'UTR
chr1:33158855(-) A-I      intronic
chr1:33147072(-) A-I      3'UTR
chr1:33147060(-) A-I      3'UTR
chr1:33153611(-) A-I      intronic
chr1:33148800(-) A-I      intronic
chr1:33146879(-) A-I      3'UTR
chr1:33146938(-) A-I      3'UTR
chr1:33147107(-) A-I      3'UTR
chr1:33153609(-) A-I      intronic
chr1:33155495(-) A-I      intronic
chr1:33153566(-) A-I      intronic
chr1:33149422(-) A-I      intronic
chr1:33149409(-) A-I      intronic
chr1:33146874(-) A-I      3'UTR
chr1:33146873(-) A-I      3'UTR
chr1:33146802(-) A-I      3'UTR
chr1:33146795(-) A-I      3'UTR
chr1:33146769(-) A-I      3'UTR
chr1:33146761(-) A-I      3'UTR
chr1:33149407(-) A-I      intronic
chr1:33154637(-) A-I      intronic
chr1:33160203(-) A-I      intronic
chr1:33159908(-) A-I      intronic
chr1:33159658(-) A-I      intronic
chr1:33159620(-) A-I      intronic
chr1:33158598(-) A-I      intronic
chr1:33158547(-) A-I      intronic
chr1:33153123(-) A-I      intronic
chr1:33153185(-) A-I      intronic
chr1:33153235(-) A-I      intronic
chr1:33154348(-) A-I      intronic
chr1:33154363(-) A-I      intronic
chr1:33158440(-) A-I      intronic
chr1:33158535(-) A-I      intronic
chr1:33158542(-) A-I      intronic
chr1:33158351(-) A-I      intronic
chr1:33158165(-) A-I      intronic
chr1:33157054(-) A-I      intronic
chr1:33157046(-) A-I      intronic
chr1:33157042(-) A-I      intronic
chr1:33164008(-) A-I      intronic
chr1:33163100(-) A-I      intronic
chr1:33163099(-) A-I      intronic
chr1:33163086(-) A-I      intronic
chr1:33153518(-) A-I      intronic
chr1:33158401(-) A-I      intronic
chr1:33152716(-) A-I      intronic
chr1:33160088(-) A-I      intronic
chr1:33154571(-) A-I      intronic
chr1:33158077(-) A-I      intronic
chr1:33154625(-) A-I      intronic
chr1:33157669(-) A-I      intronic
chr1:33153708(-) A-I      intronic
chr1:33157644(-) A-I      intronic
chr1:33158609(-) A-I      intronic
chr1:33158917(-) A-I      intronic
chr1:33166579(-) A-I      intronic
chr1:33158848(-) A-I      intronic
chr1:33157666(-) A-I      intronic
chr1:33156679(-) A-I      intronic
chr1:33158602(-) A-I      intronic
chr1:33153589(-) A-I      intronic
chr1:33158484(-) A-I      intronic
chr1:33164479(-) A-I      intronic
chr1:33158247(-) A-I      intronic
chr1:33153186(-) A-I      intronic
chr1:33154293(-) A-I      intronic
chr1:33158136(-) A-I      intronic
chr1:33158371(-) A-I      intronic
chr1:33162877(-) A-I      intronic
chr1:33153109(-) A-I      intronic
chr1:33155074(-) A-I      intronic
chr1:33156697(-) A-I      intronic
chr1:33166251(-) A-I      intronic
chr1:33163686(-) A-I      intronic
chr1:33154570(-) A-I      intronic
chr1:33154915(-) A-I      intronic
chr1:33158389(-) A-I      intronic
chr1:33154284(-) A-I      intronic
chr1:33158458(-) A-I      intronic
chr1:33157733(-) A-I      intronic
chr1:33155045(-) A-I      intronic
chr1:33158866(-) A-I      intronic
chr1:33153210(-) A-I      intronic
chr1:33158394(-) A-I      intronic
chr1:33155991(-) A-I      intronic
chr1:33156503(-) A-I      intronic
chr1:33158861(-) A-I      intronic
chr1:33155021(-) A-I      intronic
chr1:33158402(-) A-I      intronic
chr1:33158457(-) A-I      intronic
chr1:33152717(-) A-I      intronic
chr1:33157721(-) A-I      intronic
chr1:33158185(-) A-I      intronic
chr1:33153106(-) A-I      intronic
chr1:33154919(-) A-I      intronic
chr1:33155459(-) A-I      intronic
chr1:33158862(-) A-I      intronic
chr1:33155745(-) A-I      intronic
chr1:33158093(-) A-I      intronic
chr1:33158863(-) A-I      intronic
chr1:33153548(-) A-I      intronic
chr1:33153709(-) A-I      intronic
chr1:33159587(-) A-I      intronic
chr1:33158613(-) A-I      intronic
chr1:33164520(-) A-I      intronic
chr1:33159672(-) A-I      intronic
chr1:33159581(-) A-I      intronic
chr1:33158182(-) A-I      intronic
chr1:33155004(-) A-I      intronic
chr1:33159746(-) A-I      intronic
chr1:33153150(-) A-I      intronic
chr1:33158238(-) A-I      intronic
chr1:33153579(-) A-I      intronic
chr1:33155723(-) A-I      intronic
chr1:33153604(-) A-I      intronic
chr1:33154321(-) A-I      intronic
chr1:33154312(-) A-I      intronic
chr1:33159626(-) A-I      intronic
chr1:33153543(-) A-I      intronic
chr1:33158261(-) A-I      intronic
chr1:33166131(-) A-I      intronic
chr1:33158916(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SYNC
chr1:33146269-33146270(-) m6A 3'UTR       24209618//24981863//22575960
chr1:33146303-33146304(-) m6A 3'UTR       24209618//24981863//22575960
chr1:33146322-33146323(-) m6A 3'UTR       24209618//24981863//22575960
chr1:33146343-33146344(-) m6A 3'UTR       24209618//24981863//22575960
chr1:33146350-33146351(-) m6A 3'UTR       24209618//24981863//22575960
chr1:33146385-33146386(-) m6A 3'UTR       24209618//24981863//22575960
chr1:33146469-33146470(-) m6A 3'UTR       22575960
chr1:33147068-33147069(-) m6A 3'UTR       24284625//24209618//24981863
chr1:33147075-33147076(-) m6A 3'UTR       24284625//24209618//24981863
chr1:33147125-33147126(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960
chr1:33147261-33147262(-) m6A 3'UTR       24284625//24209618//24981863//22575960
chr1:33147343-33147344(-) m6A 3'UTR       24284625//24209618//24981863
chr1:33147358-33147359(-) m6A 3'UTR       24209618//24981863
chr1:33147410-33147411(-) m6A 3'UTR//CDS       24209618//24981863
chr1:33147420-33147421(-) m6A 3'UTR//CDS       24209618
chr1:33149622-33149623(-) m6A CDS//intron       24209618
chr1:33149899-33149900(-) m6A CDS       24209618
chr1:33149912-33149913(-) m6A CDS       24209618
chr1:33149980-33149981(-) m6A CDS       24284625//24209618//24981863
chr1:33160517-33160518(-) m6A CDS       24284625//24209618//24981863//22575960
chr1:33160526-33160527(-) m6A CDS       24284625//24209618//24981863//22575960
chr1:33160532-33160533(-) m6A CDS       24284625//24209618//24981863//22575960
chr1:33160570-33160571(-) m6A CDS       24284625//24209618//24981863//22575960
chr1:33160608-33160609(-) m6A CDS       24284625//24209618//24981863//22575960
chr1:33160626-33160627(-) m6A CDS       24284625//24209618//24981863//22575960
chr1:33160685-33160686(-) m6A CDS       24284625//24209618//22575960
chr1:33160837-33160838(-) m6A CDS       24284625//24209618//24981863
chr1:33161048-33161049(-) m6A CDS       24284625//24209618
chr1:33161083-33161084(-) m6A CDS       24284625//24209618
chr1:33161186-33161187(-) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161201-33161202(-) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161274-33161275(-) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161364-33161365(-) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161382-33161383(-) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161472-33161473(-) m6A 5'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161490-33161491(-) m6A 5'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161510-33161511(-) m6A 5'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161528-33161529(-) m6A 5'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161537-33161538(-) m6A 5'UTR//CDS       24284625//24209618//24981863//22575960//22608085
chr1:33161573-33161574(-) m6A 5'UTR//CDS       24284625//24209618//24981863//22608085
chr1:33161606-33161607(-) m6A 5'UTR//CDS       24284625//24209618//24981863//22608085
chr1:33161640-33161641(-) m6A 5'UTR//CDS       24284625//24209618//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SYNC
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART21-5p
Interactor2: SYNC

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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