Basic Information:

  VIRBase ID:  

VHID00413749

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-5p:  MIMAT0010130          RPRD1B:  NM_021215     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART21-5p	RPRD1B
miRBase Accession/Entrez ID	MIMAT0010130	58490
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf77//CREPT//dJ1057B20.2//K-H//Kub5-Hera//NET60

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RPRD1B	chr20:36706519(+) A-I      intronic chr20:36706322(+) A-I      intronic chr20:36706402(+) A-I      intronic chr20:36706400(+) A-I      intronic chr20:36709031(+) A-I      intronic chr20:36706316(+) A-I      intronic chr20:36706413(+) A-I      intronic chr20:36705485(+) A-I      intronic chr20:36708370(+) A-I      intronic chr20:36706490(+) A-I      intronic chr20:36705517(+) A-I      intronic chr20:36706420(+) A-I      intronic chr20:36705594(+) A-I      intronic chr20:36706431(+) A-I      intronic chr20:36706419(+) A-I      intronic chr20:36706416(+) A-I      intronic chr20:36706459(+) A-I      intronic chr20:36706369(+) A-I      intronic chr20:36705581(+) A-I      intronic chr20:36705572(+) A-I      intronic chr20:36705546(+) A-I      intronic chr20:36705459(+) A-I      intronic chr20:36706530(+) A-I      intronic chr20:36706512(+) A-I      intronic chr20:36706467(+) A-I      intronic chr20:36705557(+) A-I      intronic chr20:36706399(+) A-I      intronic chr20:36691306(+) A-I      intronic chr20:36706349(+) A-I      intronic chr20:36710971(+) A-I      intronic chr20:36706476(+) A-I      intronic chr20:36691376(+) A-I      intronic chr20:36706379(+) A-I      intronic chr20:36706331(+) A-I      intronic chr20:36696864(+) A-I      intronic chr20:36710842(+) A-I      intronic chr20:36705500(+) A-I      intronic chr20:36667162(+) A-I      intronic chr20:36691323(+) A-I      intronic chr20:36706417(+) A-I      intronic chr20:36709107(+) A-I      intronic chr20:36705399(+) A-I      intronic chr20:36706485(+) A-I      intronic chr20:36691337(+) A-I      intronic chr20:36684673(+) A-I      intronic chr20:36706323(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RPRD1B	chr20:36668247(+) T-C intron -    22484847 chr20:36705423(+) A-G intron -    22484847 chr20:36705424(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RPRD1B	chr20:36661986-36661987(+) m6A 5'UTR       24981863 chr20:36662196-36662197(+) m6A 5'UTR       24981863 chr20:36694567-36694568(+) m6A 3'UTR//CDS//exon       24209618 chr20:36694575-36694576(+) m6A 3'UTR//CDS//exon       24209618 chr20:36694651-36694652(+) m6A 3'UTR//CDS//exon       24209618 chr20:36696394-36696395(+) Gm intron       - chr20:36713804-36713805(+) m6A exon//intron       24209618 chr20:36714021-36714022(+) m6A exon//intron       24209618 chr20:36714040-36714041(+) m6A exon//intron       24209618//24981863//22608085 chr20:36718135-36718136(+) m6A 3'UTR//CDS//exon//intron       24209618//24981863//22608085 chr20:36718171-36718172(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:36718200-36718201(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:36718257-36718258(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr20:36718404-36718405(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr20:36718411-36718412(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr20:36718456-36718457(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36718498-36718499(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36718505-36718506(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//26404942//22608085 chr20:36718936-36718937(+) m6A 3'UTR//intron       24981863 chr20:36719904-36719905(+) m6A 3'UTR//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RPRD1B	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART21-5p
Interactor2: RPRD1B

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg