Basic Information:

  VIRBase ID:  

VHID00413719

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-5p:  MIMAT0010130          SERINC1:  NM_020755     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART21-5p	SERINC1
miRBase Accession/Entrez ID	MIMAT0010130	57515
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	TDE1L//TDE2//TMS-2//TMS2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SERINC1	chr6:122771133(-) A-I      intronic chr6:122787137(-) A-I      intronic chr6:122787255(-) A-I      intronic chr6:122790662(-) A-I      intronic chr6:122788639(-) A-I      intronic chr6:122787267(-) A-I      intronic chr6:122788533(-) A-I      intronic chr6:122788632(-) A-I      intronic chr6:122765212(-) A-I      3'UTR chr6:122765170(-) A-I      3'UTR chr6:122765208(-) A-I      3'UTR chr6:122765423(-) A-I      3'UTR chr6:122765399(-) A-I      3'UTR chr6:122765382(-) A-I      3'UTR chr6:122765364(-) A-I      3'UTR chr6:122765348(-) A-I      3'UTR chr6:122765345(-) A-I      3'UTR chr6:122765335(-) A-I      3'UTR chr6:122765309(-) A-I      3'UTR chr6:122765288(-) A-I      3'UTR chr6:122765255(-) A-I      3'UTR chr6:122765237(-) A-I      3'UTR chr6:122765229(-) A-I      3'UTR chr6:122765225(-) A-I      3'UTR chr6:122765232(-) A-I      3'UTR chr6:122765355(-) A-I      3'UTR chr6:122790656(-) A-I      intronic chr6:122788700(-) A-I      intronic chr6:122787654(-) A-I      intronic chr6:122787222(-) A-I      intronic chr6:122788668(-) A-I      intronic chr6:122790620(-) A-I      intronic chr6:122765291(-) A-I      3'UTR chr6:122765264(-) A-I      3'UTR chr6:122765350(-) A-I      3'UTR chr6:122765248(-) A-I      3'UTR chr6:122765286(-) A-I      3'UTR chr6:122788669(-) A-I      intronic chr6:122766955(-) A-I      intronic chr6:122788743(-) A-I      intronic chr6:122787754(-) A-I      intronic chr6:122787146(-) A-I      intronic chr6:122788588(-) A-I      intronic chr6:122787216(-) A-I      intronic chr6:122788505(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SERINC1	chr6:122765180(-) G-T exon 3'UTR    22484847 chr6:122765330(-) G-T exon 3'UTR    22484847 chr6:122787146(-) A-G intron -    22484847 chr6:122787222(-) A-G intron -    22484847 chr6:122788539(-) A-G intron -    22484847 chr6:122788588(-) A-G intron -    22484847 chr6:122788596(-) A-G intron -    22484847 chr6:122788629(-) A-G intron -    22484847 chr6:122788668(-) A-G intron -    22484847 chr6:122788669(-) A-G intron -    22484847 chr6:122788700(-) A-G intron -    22484847 chr6:122790991(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SERINC1	chr6:122765019-122765020(-) m6A 3'UTR       26404942 chr6:122765033-122765034(-) m6A 3'UTR       26404942 chr6:122765097-122765098(-) m6A 3'UTR       27773535 chr6:122765166-122765167(-) m6A 3'UTR       27773535 chr6:122765515-122765516(-) m6A 3'UTR       26404942 chr6:122765550-122765551(-) m6A 3'UTR       26404942 chr6:122765569-122765570(-) m6A 3'UTR       26404942 chr6:122766182-122766183(-) m6A 3'UTR       24981863 chr6:122766232-122766233(-) m6A CDS       24981863 chr6:122766289-122766290(-) m6A CDS       24981863 chr6:122766317-122766318(-) m6A CDS       24981863 chr6:122768115-122768116(-) m6A CDS       26404942 chr6:122768134-122768135(-) m6A CDS       26404942 chr6:122768300-122768301(-) m6A CDS       26404942 chr6:122779767-122779768(-) m6A CDS       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SERINC1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART21-5p
Interactor2: SERINC1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg