Detail Information

Basic Information:


  VIRBase ID:  

VHID00413663

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-5p:           TMEM30A:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART21-5p TMEM30A
miRBase
Accession/Entrez ID		 MIMAT0010130 55754
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - C6orf67//CDC50A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMEM30A
chr6:75979619(-) A-I      intronic
chr6:75987571(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMEM30A
chr6:75966151(-) G-T intron -    22484847
chr6:75966152(-) T-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMEM30A
chr6:75962643-75962644(-) m6A 3'UTR       27773535
chr6:75962670-75962671(-) m6A 3'UTR       27773535
chr6:75962705-75962706(-) m6A 3'UTR       27773535
chr6:75962736-75962737(-) m6A 3'UTR       27773535
chr6:75962849-75962850(-) m6A 3'UTR       27773535
chr6:75962918-75962919(-) m6A 3'UTR       24981863//28052920//27773535
chr6:75962998-75962999(-) m6A 3'UTR       24981863//27773535
chr6:75963047-75963048(-) m6A 3'UTR       24981863//27773535
chr6:75963089-75963090(-) m6A 3'UTR       24981863
chr6:75963337-75963338(-) m6A 3'UTR       27773535
chr6:75963595-75963596(-) m6A 3'UTR       24284625//24981863//26404942//27773535//22608085
chr6:75963623-75963624(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr6:75963717-75963718(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr6:75963756-75963757(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr6:75963786-75963787(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr6:75963977-75963978(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr6:75964962-75964963(-) m6A 3'UTR       24981863
chr6:75964986-75964987(-) m6A 3'UTR       24981863
chr6:75965556-75965557(-) m6A 3'UTR       27773535
chr6:75965848-75965849(-) m6A CDS       24284625//24981863//26404942//27773535
chr6:75969085-75969086(-) m6A CDS       26404942
chr6:75969125-75969126(-) m6A CDS       26404942
chr6:75994252-75994253(-) m6A CDS       24981863//26404942//27773535
chr6:75994273-75994274(-) m6A CDS       24209618//24981863//26404942//27773535//27371828
chr6:75994281-75994282(-) m6A CDS       24209618//24981863//26404942//27773535//27371828
chr6:75994343-75994344(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMEM30A
Chromatin K562 cells     -
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART21-5p
Interactor2: TMEM30A

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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