Basic Information:

  VIRBase ID:  

VHID00413484

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-5p:  MIMAT0010130          PCDH17:  NM_001040429     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART21-5p	PCDH17
miRBase Accession/Entrez ID	MIMAT0010130	27253
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PCDH68//PCH68

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PCDH17	chr13:58225706(+) A-I      intronic chr13:58225699(+) A-I      intronic chr13:58225749(+) A-I      intronic chr13:58225746(+) A-I      intronic chr13:58225734(+) A-I      intronic chr13:58225733(+) A-I      intronic chr13:58259964(+) A-I      intronic chr13:58262320(+) A-I      intronic chr13:58280099(+) A-I      intronic chr13:58225527(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PCDH17	chr13:58206385-58206386(+) m6A 5'UTR       22608085 chr13:58206500-58206501(+) m6A 5'UTR       24981863//22608085 chr13:58206521-58206522(+) m6A 5'UTR       25456834//24981863//22608085 chr13:58206561-58206562(+) m6A 5'UTR       25456834//24981863//22608085 chr13:58206569-58206570(+) m6A 5'UTR       25456834//24981863//22608085 chr13:58206738-58206739(+) m6A CDS       24981863 chr13:58206789-58206790(+) m6A CDS       24981863 chr13:58207083-58207084(+) m6A CDS       24981863 chr13:58207098-58207099(+) m6A CDS       25456834//24981863 chr13:58207219-58207220(+) m6A CDS       25456834//24981863//22608085 chr13:58207261-58207262(+) m6A CDS       24981863//22608085 chr13:58207284-58207285(+) m6A CDS       24981863//22608085 chr13:58207577-58207578(+) m6A CDS       24981863 chr13:58207608-58207609(+) m6A CDS       24981863 chr13:58207653-58207654(+) m6A CDS       24981863 chr13:58207818-58207819(+) m6A CDS       25456834//22608085 chr13:58207834-58207835(+) m6A CDS       25456834//22608085 chr13:58207929-58207930(+) m6A CDS       24981863 chr13:58207971-58207972(+) m6A CDS       24981863 chr13:58207979-58207980(+) m6A CDS       24981863 chr13:58208130-58208131(+) m6A CDS       24981863 chr13:58208312-58208313(+) m6A CDS       24981863//22608085 chr13:58208346-58208347(+) m6A CDS       25456834//24981863//22608085 chr13:58208520-58208521(+) m6A CDS       24981863//22608085 chr13:58208787-58208788(+) m6A CDS       24981863//22575960//22608085 chr13:58208880-58208881(+) m6A CDS       24981863 chr13:58209083-58209084(+) m6A CDS       25456834//24981863//22608085 chr13:58209130-58209131(+) m6A CDS       25456834//24981863//22608085 chr13:58209193-58209194(+) m6A CDS       25456834//24981863//22608085 chr13:58209200-58209201(+) m6A CDS       25456834//24981863//22608085 chr13:58209215-58209216(+) m6A CDS       25456834//24981863 chr13:58240605-58240606(+) m6A CDS       25456834//24981863 chr13:58298897-58298898(+) m6A 3'UTR//CDS       24209618//24981863//22575960//22608085 chr13:58298903-58298904(+) m6A 3'UTR//CDS       24209618//24981863//22575960//22608085 chr13:58298912-58298913(+) m6A 3'UTR//CDS       24209618//24981863//22575960//22608085 chr13:58298936-58298937(+) m6A 3'UTR//CDS       24209618//24981863//22575960//22608085 chr13:58298958-58298959(+) m6A 3'UTR//CDS       24209618//24981863//22608085 chr13:58298995-58298996(+) m6A 3'UTR//CDS       24209618//24981863//22608085 chr13:58299127-58299128(+) m6A 3'UTR//CDS       24981863 chr13:58299207-58299208(+) m6A 3'UTR//CDS       24981863 chr13:58299390-58299391(+) m6A 3'UTR//CDS       24981863//22608085 chr13:58299527-58299528(+) m6A 3'UTR       24981863//22608085 chr13:58299555-58299556(+) m6A 3'UTR       24981863//27773535//22608085 chr13:58299634-58299635(+) m6A 3'UTR       24981863//27773535//22608085 chr13:58299646-58299647(+) m6A 3'UTR       24981863//27773535//22608085 chr13:58299768-58299769(+) m6A 3'UTR       24981863//27773535//22608085 chr13:58299794-58299795(+) m6A 3'UTR       24981863//22608085 chr13:58299837-58299838(+) m6A 3'UTR       24981863//22608085 chr13:58299922-58299923(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PCDH17	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART21-5p
Interactor2: PCDH17

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg